Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46948 * 2 1 4 4 O 1.42892 * 109.46909 * 120.00208 * 2 1 3 5 5 C 1.53004 * 109.47094 * 240.00054 * 2 1 3 6 6 C 1.52997 * 109.46925 * 175.00429 * 5 2 1 7 7 H 1.08998 * 115.54896 * 330.57658 * 6 5 2 8 8 C 1.52998 * 117.52050 * 116.28548 * 6 5 2 9 9 H 1.09008 * 117.49753 * 214.96897 * 8 6 5 10 10 C 1.50696 * 117.49651 * 359.97438 * 8 6 5 11 11 H 1.08001 * 120.00282 * 55.74802 * 10 8 6 12 12 C 1.37880 * 119.99941 * 235.74362 * 10 8 6 13 13 N 1.31513 * 120.00236 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99949 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47120 * 59.99794 * 14 12 10 16 16 H 1.48500 * 109.47120 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46951 * 299.99884 * 14 12 10 18 18 C 1.52997 * 117.49525 * 184.91455 * 6 5 2 19 19 C 1.53000 * 117.50300 * 359.96830 * 18 6 5 20 20 C 1.53002 * 117.49899 * 144.97236 * 18 6 5 21 21 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47221 * 299.99997 * 1 2 3 23 23 H 1.09002 * 109.47111 * 60.00349 * 1 2 3 24 24 H 0.96697 * 114.00522 * 59.99983 * 4 2 1 25 25 H 1.09000 * 109.47096 * 55.00176 * 5 2 1 26 26 H 1.09004 * 109.46585 * 295.00013 * 5 2 1 27 27 H 0.96996 * 119.99829 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.46746 * 66.87393 * 19 18 6 29 29 H 1.09000 * 109.47136 * 186.86897 * 19 18 6 30 30 H 1.08997 * 109.47095 * 306.87895 * 19 18 6 31 31 H 1.09001 * 109.47483 * 59.99741 * 20 18 6 32 32 H 1.09003 * 109.47444 * 179.97438 * 20 18 6 33 33 H 1.09003 * 109.47053 * 299.99863 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6134 -1.3136 7 1 3.9926 0.2792 -0.8571 8 6 4.3700 -1.9108 -1.2183 9 1 5.3276 -1.8719 -0.6989 10 6 3.6005 -3.1977 -1.0675 11 1 2.8450 -3.4632 -1.7921 12 6 3.8611 -4.0363 -0.0045 13 7 4.7808 -3.7128 0.8782 14 14 2.9077 -5.6318 0.1820 15 1 3.1330 -6.4855 -1.0120 16 1 3.3727 -6.3471 1.3975 17 1 1.4590 -5.3309 0.3092 18 6 4.2609 -1.1747 -2.5551 19 6 3.3790 -1.8016 -3.6368 20 6 5.5040 -0.4400 -3.0610 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.7210 -1.5952 1.2329 25 1 1.6054 -0.2617 -2.1370 26 1 1.7516 -1.7715 -1.2055 27 1 4.9638 -4.3026 1.6262 28 1 2.7636 -1.0285 -4.0970 29 1 4.0092 -2.2643 -4.3964 30 1 2.7359 -2.5585 -3.1878 31 1 6.2656 -0.4350 -2.2812 32 1 5.8920 -0.9477 -3.9440 33 1 5.2402 0.5860 -3.3178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167023053.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -69.399995 kcal Electronic energy + Delta-G solvation = -13333.932825 eV Core-core repulsion = 11165.855358 eV Total energy + Delta-G solvation = -2168.077467 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80905 -37.78741 -34.36945 -32.56483 -30.22326 -28.44656 -28.19014 -26.28988 -22.52925 -21.21596 -19.22699 -18.19580 -16.94325 -16.64371 -16.25177 -15.47970 -15.03314 -14.73286 -14.19862 -13.81025 -13.50039 -13.33295 -13.07416 -12.78480 -12.69294 -12.63132 -12.56806 -12.30285 -11.97101 -11.75269 -11.36395 -11.00816 -10.81012 -10.79530 -9.88908 -9.67790 -8.07619 -6.08249 1.44876 1.46402 1.53944 2.45697 3.04230 3.50791 3.78237 4.05790 4.29053 4.35644 4.42400 4.48183 4.56510 4.80879 4.87230 4.90686 4.94765 5.04476 5.12633 5.17500 5.22639 5.35525 5.37132 5.37672 5.56064 5.60518 5.64591 5.89393 5.97156 6.52372 6.96797 6.97923 7.50317 9.03431 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.016297 C = 0.011591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.437537 B = 1717.728659 C = 2415.129792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H 0.085 0.915 4 O -0.579 6.579 5 C -0.099 4.099 6 C -0.161 4.161 7 H 0.061 0.939 8 C 0.008 3.992 9 H 0.034 0.966 10 C -0.483 4.483 11 H 0.068 0.932 12 C 0.017 3.983 13 N -0.924 5.924 14 Si 0.952 3.048 15 H -0.273 1.273 16 H -0.292 1.292 17 H -0.262 1.262 18 C -0.163 4.163 19 C -0.098 4.098 20 C -0.102 4.102 21 H 0.056 0.944 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.377 0.623 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.259 0.741 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 4.873 -5.246 10.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.043 3.957 3 H 0.103 0.897 4 O -0.386 6.386 5 C -0.136 4.136 6 C -0.180 4.180 7 H 0.080 0.920 8 C -0.010 4.010 9 H 0.053 0.947 10 C -0.521 4.521 11 H 0.086 0.914 12 C -0.182 4.182 13 N -0.563 5.563 14 Si 0.777 3.223 15 H -0.198 1.198 16 H -0.218 1.218 17 H -0.186 1.186 18 C -0.164 4.164 19 C -0.155 4.155 20 C -0.159 4.159 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.224 0.776 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.737 5.388 -4.974 9.958 hybrid contribution -0.142 -1.300 0.381 1.362 sum -6.879 4.088 -4.593 9.227 Atomic orbital electron populations 1.22416 0.95021 1.02629 1.03018 1.21957 0.93484 0.95655 0.84604 0.89670 1.86476 1.78507 1.29233 1.44362 1.21627 0.93325 1.01241 0.97419 1.22354 0.94893 0.98784 1.02005 0.92048 1.19990 0.96029 0.91066 0.93939 0.94749 1.20837 1.19403 1.03273 1.08541 0.91401 1.25768 0.95918 1.00921 0.95624 1.70111 1.33568 1.38588 1.14032 0.85718 0.79601 0.79840 0.77134 1.19843 1.21794 1.18617 1.21861 0.98948 1.04976 0.90588 1.21159 0.98515 0.99556 0.96223 1.21225 0.95226 0.99479 0.99998 0.92459 0.91825 0.90167 0.77565 0.91235 0.91662 0.93216 0.92442 0.93087 0.92789 0.94770 0.91976 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 9.53 71.98 0.69 -3.87 16 2 C 0.10 3.48 3.54 30.60 0.11 3.59 16 3 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 4 O -0.58 -24.10 13.10 -148.98 -1.95 -26.05 16 5 C -0.10 -3.67 4.02 30.59 0.12 -3.55 16 6 C -0.16 -7.01 5.23 -10.80 -0.06 -7.07 16 7 H 0.06 2.75 8.08 -2.39 -0.02 2.73 16 8 C 0.01 0.43 5.38 -11.54 -0.06 0.37 16 9 H 0.03 2.05 7.51 -2.38 -0.02 2.03 16 10 C -0.48 -25.54 6.99 25.60 0.18 -25.36 16 11 H 0.07 3.43 5.29 -2.91 -0.02 3.42 16 12 C 0.02 0.90 5.46 84.66 0.46 1.37 16 13 N -0.92 -54.72 12.95 21.45 0.28 -54.44 16 14 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 C -0.16 -6.76 2.70 -52.18 -0.14 -6.90 16 19 C -0.10 -3.56 8.60 71.98 0.62 -2.94 16 20 C -0.10 -3.67 9.85 71.98 0.71 -2.96 16 21 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.38 15.07 9.05 -74.06 -0.67 14.40 16 25 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16 26 H 0.06 2.69 5.93 -2.38 -0.01 2.67 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.72 8.04 -2.39 -0.02 1.71 16 30 H 0.05 2.13 5.17 -2.39 -0.01 2.11 16 31 H 0.03 1.30 7.90 -2.39 -0.02 1.28 16 32 H 0.06 2.01 8.01 -2.39 -0.02 1.99 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.91 268.38 3.39 -57.52 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.41 Total: 25.91 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 2.63 Total: -47.33 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.44 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -1.95 Total: -26.05 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -60.91 3.39 -57.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167023053.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.876 kcal (2) G-P(sol) polarization free energy of solvation -60.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds