Wall clock time and date at job start Mon Mar 30 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47489 * 2 1 4 4 O 1.42903 * 109.47023 * 239.99566 * 2 1 3 5 5 C 1.53003 * 109.46739 * 120.00154 * 2 1 3 6 6 C 1.53001 * 109.47108 * 184.99899 * 5 2 1 7 7 H 1.09004 * 115.54814 * 29.32310 * 6 5 2 8 8 C 1.52998 * 117.49791 * 243.62144 * 6 5 2 9 9 H 1.09005 * 117.50170 * 145.01829 * 8 6 5 10 10 C 1.50697 * 117.49860 * 359.97438 * 8 6 5 11 11 H 1.08002 * 120.00445 * 294.86912 * 10 8 6 12 12 C 1.37879 * 119.99785 * 114.86671 * 10 8 6 13 13 N 1.31512 * 120.00198 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99961 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47412 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47216 * 120.00148 * 14 12 10 17 17 H 1.48498 * 109.47255 * 240.00183 * 14 12 10 18 18 C 1.53002 * 117.50012 * 174.99712 * 6 5 2 19 19 C 1.53007 * 117.49831 * 214.97792 * 18 6 5 20 20 C 1.52992 * 117.49952 * 359.97438 * 18 6 5 21 21 H 1.08997 * 109.47032 * 300.00662 * 1 2 3 22 22 H 1.09005 * 109.47133 * 59.99835 * 1 2 3 23 23 H 1.09000 * 109.47489 * 180.02562 * 1 2 3 24 24 H 0.96701 * 113.99785 * 300.00293 * 4 2 1 25 25 H 1.08994 * 109.47667 * 64.99435 * 5 2 1 26 26 H 1.09001 * 109.46650 * 304.99206 * 5 2 1 27 27 H 0.97001 * 119.99998 * 180.02562 * 13 12 10 28 28 H 1.08996 * 109.47071 * 59.99954 * 19 18 6 29 29 H 1.08993 * 109.46610 * 180.02562 * 19 18 6 30 30 H 1.09005 * 109.46541 * 299.99962 * 19 18 6 31 31 H 1.09007 * 109.47419 * 52.80126 * 20 18 6 32 32 H 1.08999 * 109.47227 * 172.80529 * 20 18 6 33 33 H 1.08998 * 109.47240 * 292.80817 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2493 6 6 3.5647 -0.6134 1.3138 7 1 3.9927 0.2784 0.8559 8 6 4.3693 -1.9114 1.2206 9 1 5.3269 -1.8738 0.7012 10 6 3.5993 -3.1983 1.0728 11 1 2.9557 -3.5373 1.8712 12 6 3.7163 -3.9431 -0.0816 13 7 4.5003 -3.5306 -1.0536 14 14 2.7612 -5.5379 -0.2651 15 1 1.9571 -5.7772 0.9603 16 1 1.8569 -5.4411 -1.4389 17 1 3.7099 -6.6631 -0.4626 18 6 4.2606 -1.1730 2.5562 19 6 5.5044 -0.4382 3.0605 20 6 3.3784 -1.7970 3.6393 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7209 -1.5953 -1.2328 25 1 1.7515 -1.7715 1.2057 26 1 1.6053 -0.2617 2.1369 27 1 4.5823 -4.0544 -1.8659 28 1 5.2415 0.5884 3.3154 29 1 5.8920 -0.9446 3.9444 30 1 6.2658 -0.4353 2.2805 31 1 2.7305 -2.5503 3.1908 32 1 4.0082 -2.2637 4.3966 33 1 2.7678 -1.0216 4.1019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213338153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:16 Heat of formation + Delta-G solvation = -51.475991 kcal Electronic energy + Delta-G solvation = -13373.814547 eV Core-core repulsion = 11206.514322 eV Total energy + Delta-G solvation = -2167.300224 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.09462 -36.16081 -32.34219 -31.02407 -28.63165 -26.85480 -26.47792 -24.49618 -21.01212 -19.34211 -17.52693 -16.22024 -15.28422 -14.93319 -14.53895 -13.86779 -13.34083 -13.05945 -12.73429 -12.11783 -12.06418 -11.72538 -11.55236 -11.29678 -11.02514 -10.93000 -10.77802 -10.64596 -10.26178 -10.08461 -9.75242 -9.20907 -9.09044 -8.75896 -8.02694 -7.90010 -6.03018 -4.00790 3.25357 3.35565 3.37756 4.38831 4.92558 5.17734 5.40339 5.55834 5.66027 5.83747 5.96084 6.01480 6.13452 6.23777 6.34326 6.37409 6.44063 6.51927 6.59322 6.69984 6.82229 6.89078 6.98997 7.08515 7.19942 7.26206 7.60520 7.73501 7.95062 8.52601 8.55996 9.00462 9.56633 11.06449 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.016778 C = 0.011823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.739931 B = 1668.469782 C = 2367.625560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.081 0.919 4 O -0.553 6.553 5 C -0.106 4.106 6 C -0.166 4.166 7 H 0.070 0.930 8 C 0.051 3.949 9 H 0.073 0.927 10 C -0.488 4.488 11 H 0.063 0.937 12 C 0.070 3.930 13 N -0.875 5.875 14 Si 0.883 3.117 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.178 4.178 19 C -0.103 4.103 20 C -0.102 4.102 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.376 0.624 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.260 0.740 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 4.172 3.924 7.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.047 3.953 3 H 0.099 0.901 4 O -0.358 6.358 5 C -0.143 4.143 6 C -0.185 4.185 7 H 0.088 0.912 8 C 0.033 3.967 9 H 0.091 0.909 10 C -0.525 4.525 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.511 5.511 14 Si 0.711 3.289 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.178 4.178 19 C -0.160 4.160 20 C -0.159 4.159 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.223 0.777 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.554 4.697 3.621 7.478 hybrid contribution -0.758 -1.231 0.024 1.446 sum -5.312 3.466 3.645 7.316 Atomic orbital electron populations 1.22541 0.98200 1.02016 1.01381 1.21775 0.90929 0.96132 0.86416 0.90142 1.86509 1.77642 1.28958 1.42723 1.21674 0.95222 1.01936 0.95454 1.22306 0.93406 1.01253 1.01513 0.91167 1.20102 0.96822 0.89738 0.90064 0.90875 1.20665 1.26039 1.04658 1.01130 0.91937 1.25001 0.95175 0.97195 0.96002 1.69993 1.36908 1.38138 1.06081 0.86685 0.80053 0.84087 0.78074 1.19767 1.20912 1.21007 1.21646 0.98084 1.06934 0.91137 1.21215 0.96654 0.98236 0.99878 1.21186 0.98654 0.99285 0.96726 0.92433 0.92800 0.92552 0.77655 0.89861 0.93799 0.92967 0.94340 0.93649 0.93358 0.91237 0.94255 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.53 37.16 0.35 -2.38 16 2 C 0.11 1.95 3.54 -26.73 -0.09 1.85 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 4 O -0.55 -11.77 13.10 -35.23 -0.46 -12.24 16 5 C -0.11 -2.08 4.01 -26.73 -0.11 -2.19 16 6 C -0.17 -3.66 5.24 -90.62 -0.47 -4.14 16 7 H 0.07 1.59 8.07 -51.93 -0.42 1.17 16 8 C 0.05 1.28 5.27 -91.77 -0.48 0.80 16 9 H 0.07 2.05 7.72 -51.93 -0.40 1.65 16 10 C -0.49 -12.74 6.80 -34.44 -0.23 -12.97 16 11 H 0.06 1.61 5.59 -52.49 -0.29 1.32 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.87 -24.72 13.07 55.43 0.72 -24.00 16 14 Si 0.88 20.34 29.54 -169.99 -5.02 15.32 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.18 -3.78 2.70 -154.51 -0.42 -4.20 16 19 C -0.10 -1.92 9.85 37.16 0.37 -1.55 16 20 C -0.10 -1.99 8.60 37.15 0.32 -1.67 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.38 7.73 9.05 45.56 0.41 8.14 16 25 H 0.08 1.79 6.12 -51.93 -0.32 1.48 16 26 H 0.04 0.79 8.02 -51.93 -0.42 0.38 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 30 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.07 1.45 5.16 -51.93 -0.27 1.18 16 32 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 268.88 15.07 4.05 4.05 Total: -1.00 -27.82 268.88 -6.19 -34.01 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -4.62 Total: 7.52 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -0.87 Total: -24.67 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.72 Total: -24.00 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.46 Total: -12.24 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.82 -6.19 -34.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213338153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.467 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds