Wall clock time and date at job start Mon Mar 30 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47489 * 2 1 4 4 O 1.42903 * 109.47023 * 239.99566 * 2 1 3 5 5 C 1.53003 * 109.46739 * 120.00154 * 2 1 3 6 6 C 1.53001 * 109.47108 * 184.99899 * 5 2 1 7 7 H 1.09004 * 115.54814 * 29.32310 * 6 5 2 8 8 C 1.52998 * 117.49791 * 243.62144 * 6 5 2 9 9 H 1.09005 * 117.50170 * 145.01829 * 8 6 5 10 10 C 1.50697 * 117.49860 * 359.97438 * 8 6 5 11 11 H 1.08002 * 120.00445 * 294.86912 * 10 8 6 12 12 C 1.37879 * 119.99785 * 114.86671 * 10 8 6 13 13 N 1.31512 * 120.00198 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99961 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47412 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47216 * 120.00148 * 14 12 10 17 17 H 1.48498 * 109.47255 * 240.00183 * 14 12 10 18 18 C 1.53002 * 117.50012 * 174.99712 * 6 5 2 19 19 C 1.53007 * 117.49831 * 214.97792 * 18 6 5 20 20 C 1.52992 * 117.49952 * 359.97438 * 18 6 5 21 21 H 1.08997 * 109.47032 * 300.00662 * 1 2 3 22 22 H 1.09005 * 109.47133 * 59.99835 * 1 2 3 23 23 H 1.09000 * 109.47489 * 180.02562 * 1 2 3 24 24 H 0.96701 * 113.99785 * 300.00293 * 4 2 1 25 25 H 1.08994 * 109.47667 * 64.99435 * 5 2 1 26 26 H 1.09001 * 109.46650 * 304.99206 * 5 2 1 27 27 H 0.97001 * 119.99998 * 180.02562 * 13 12 10 28 28 H 1.08996 * 109.47071 * 59.99954 * 19 18 6 29 29 H 1.08993 * 109.46610 * 180.02562 * 19 18 6 30 30 H 1.09005 * 109.46541 * 299.99962 * 19 18 6 31 31 H 1.09007 * 109.47419 * 52.80126 * 20 18 6 32 32 H 1.08999 * 109.47227 * 172.80529 * 20 18 6 33 33 H 1.08998 * 109.47240 * 292.80817 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2493 6 6 3.5647 -0.6134 1.3138 7 1 3.9927 0.2784 0.8559 8 6 4.3693 -1.9114 1.2206 9 1 5.3269 -1.8738 0.7012 10 6 3.5993 -3.1983 1.0728 11 1 2.9557 -3.5373 1.8712 12 6 3.7163 -3.9431 -0.0816 13 7 4.5003 -3.5306 -1.0536 14 14 2.7612 -5.5379 -0.2651 15 1 1.9571 -5.7772 0.9603 16 1 1.8569 -5.4411 -1.4389 17 1 3.7099 -6.6631 -0.4626 18 6 4.2606 -1.1730 2.5562 19 6 5.5044 -0.4382 3.0605 20 6 3.3784 -1.7970 3.6393 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7209 -1.5953 -1.2328 25 1 1.7515 -1.7715 1.2057 26 1 1.6053 -0.2617 2.1369 27 1 4.5823 -4.0544 -1.8659 28 1 5.2415 0.5884 3.3154 29 1 5.8920 -0.9446 3.9444 30 1 6.2658 -0.4353 2.2805 31 1 2.7305 -2.5503 3.1908 32 1 4.0082 -2.2637 4.3966 33 1 2.7678 -1.0216 4.1019 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213338153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:16 Heat of formation + Delta-G solvation = -68.874280 kcal Electronic energy + Delta-G solvation = -13374.568993 eV Core-core repulsion = 11206.514322 eV Total energy + Delta-G solvation = -2168.054671 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80152 -37.77081 -34.34834 -32.54985 -30.20813 -28.45022 -28.19313 -26.27404 -22.51903 -21.20796 -19.21830 -18.16225 -16.94362 -16.61221 -16.25284 -15.48476 -15.03459 -14.72370 -14.19611 -13.82714 -13.49429 -13.33385 -13.08824 -12.82366 -12.70600 -12.58598 -12.52793 -12.30718 -11.96591 -11.74397 -11.35177 -11.01834 -10.79390 -10.73826 -9.87097 -9.66909 -8.05441 -6.07640 1.42545 1.46559 1.56319 2.46156 3.07508 3.50352 3.77280 4.06368 4.29663 4.35339 4.42310 4.48483 4.57006 4.80107 4.87578 4.90801 4.95198 5.04608 5.12847 5.17501 5.22837 5.36039 5.37933 5.38094 5.56180 5.61985 5.66089 5.90651 5.98739 6.52552 6.97020 6.98419 7.52095 9.05420 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.016778 C = 0.011823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.739931 B = 1668.469782 C = 2367.625560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 H 0.085 0.915 4 O -0.577 6.577 5 C -0.098 4.098 6 C -0.159 4.159 7 H 0.060 0.940 8 C 0.011 3.989 9 H 0.029 0.971 10 C -0.486 4.486 11 H 0.067 0.933 12 C 0.020 3.980 13 N -0.917 5.917 14 Si 0.948 3.052 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.289 1.289 18 C -0.160 4.160 19 C -0.103 4.103 20 C -0.099 4.099 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.375 0.625 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.258 0.742 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 4.648 5.567 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 H 0.103 0.897 4 O -0.383 6.383 5 C -0.135 4.135 6 C -0.178 4.178 7 H 0.078 0.922 8 C -0.008 4.008 9 H 0.047 0.953 10 C -0.523 4.523 11 H 0.085 0.915 12 C -0.179 4.179 13 N -0.556 5.556 14 Si 0.774 3.226 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.215 1.215 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.155 4.155 21 H 0.099 0.901 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.222 0.778 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.199 5.180 5.286 9.655 hybrid contribution -0.187 -1.299 -0.437 1.383 sum -6.386 3.881 4.849 8.909 Atomic orbital electron populations 1.22416 0.95065 1.02597 1.02996 1.21963 0.93460 0.95632 0.84731 0.89734 1.86487 1.78490 1.29041 1.44286 1.21612 0.93367 1.01227 0.97289 1.22330 0.94898 0.98776 1.01831 0.92202 1.19936 0.95808 0.91223 0.93813 0.95307 1.20881 1.25498 1.04941 1.00966 0.91540 1.25711 0.96145 1.00338 0.95742 1.70141 1.39057 1.39694 1.06722 0.85669 0.78662 0.79951 0.78344 1.18713 1.20404 1.21515 1.21839 0.98946 1.04814 0.90467 1.21231 0.95172 0.99499 1.00058 1.21170 0.98546 0.99606 0.96214 0.90132 0.91875 0.92495 0.77781 0.91667 0.91304 0.93275 0.92021 0.91851 0.94703 0.92798 0.92966 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.67 9.53 71.98 0.69 -3.98 16 2 C 0.10 3.53 3.54 30.59 0.11 3.64 16 3 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 4 O -0.58 -24.71 13.10 -148.98 -1.95 -26.67 16 5 C -0.10 -3.69 4.01 30.60 0.12 -3.57 16 6 C -0.16 -6.98 5.24 -10.79 -0.06 -7.03 16 7 H 0.06 2.71 8.07 -2.39 -0.02 2.69 16 8 C 0.01 0.55 5.27 -11.54 -0.06 0.49 16 9 H 0.03 1.71 7.72 -2.38 -0.02 1.69 16 10 C -0.49 -25.63 6.80 25.60 0.17 -25.46 16 11 H 0.07 3.40 5.59 -2.91 -0.02 3.38 16 12 C 0.02 1.08 5.46 84.66 0.46 1.54 16 13 N -0.92 -53.72 13.07 21.45 0.28 -53.44 16 14 Si 0.95 42.24 29.54 68.60 2.03 44.26 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 C -0.16 -6.61 2.70 -52.18 -0.14 -6.75 16 19 C -0.10 -3.64 9.85 71.98 0.71 -2.93 16 20 C -0.10 -3.57 8.60 71.98 0.62 -2.95 16 21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.37 15.72 9.05 -74.06 -0.67 15.05 16 25 H 0.06 2.74 6.12 -2.39 -0.01 2.72 16 26 H 0.07 2.26 8.02 -2.39 -0.02 2.24 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 2.01 8.01 -2.39 -0.02 1.99 16 30 H 0.03 1.30 7.90 -2.38 -0.02 1.29 16 31 H 0.05 2.13 5.16 -2.38 -0.01 2.12 16 32 H 0.05 1.74 8.04 -2.39 -0.02 1.73 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -60.43 268.88 3.38 -57.04 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.41 Total: 25.81 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 2.62 Total: -47.01 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.28 Total: -53.44 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.95 Total: -26.67 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -60.43 3.38 -57.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213338153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.830 kcal (2) G-P(sol) polarization free energy of solvation -60.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds