Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46625 * 2 1 4 4 O 1.42896 * 109.47016 * 240.00329 * 2 1 3 5 5 C 1.52994 * 109.47230 * 119.99810 * 2 1 3 6 6 C 1.53005 * 109.47229 * 185.00463 * 5 2 1 7 7 H 1.09001 * 115.54190 * 330.57852 * 6 5 2 8 8 C 1.52994 * 117.49936 * 116.25223 * 6 5 2 9 9 H 1.08992 * 117.49985 * 0.02727 * 8 6 5 10 10 C 1.50702 * 117.49681 * 215.02596 * 8 6 5 11 11 H 1.08001 * 119.99906 * 4.83281 * 10 8 6 12 12 C 1.37876 * 120.00004 * 184.83904 * 10 8 6 13 13 N 1.31508 * 119.99757 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99963 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47039 * 89.99932 * 14 12 10 16 16 H 1.48494 * 109.46989 * 209.99809 * 14 12 10 17 17 H 1.48498 * 109.46990 * 330.00008 * 14 12 10 18 18 C 1.52989 * 117.49966 * 184.91649 * 6 5 2 19 19 C 1.53000 * 117.50187 * 359.97227 * 18 6 5 20 20 C 1.53002 * 117.50233 * 144.99363 * 18 6 5 21 21 H 1.08999 * 109.47581 * 299.99558 * 1 2 3 22 22 H 1.08993 * 109.47458 * 60.00396 * 1 2 3 23 23 H 1.09005 * 109.47084 * 179.97438 * 1 2 3 24 24 H 0.96708 * 113.99860 * 299.99190 * 4 2 1 25 25 H 1.09003 * 109.47200 * 65.00697 * 5 2 1 26 26 H 1.08999 * 109.47515 * 305.00430 * 5 2 1 27 27 H 0.97006 * 119.99751 * 179.97438 * 13 12 10 28 28 H 1.08998 * 109.47352 * 60.00209 * 19 18 6 29 29 H 1.09003 * 109.47357 * 180.02562 * 19 18 6 30 30 H 1.09004 * 109.46985 * 300.00058 * 19 18 6 31 31 H 1.09003 * 109.47051 * 54.14742 * 20 18 6 32 32 H 1.08996 * 109.47339 * 174.14371 * 20 18 6 33 33 H 1.08996 * 109.47084 * 294.14762 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5649 -0.6131 1.3137 7 1 4.0720 -0.5400 0.3516 8 6 4.1695 0.1540 2.4913 9 1 3.4811 0.5814 3.2202 10 6 5.4205 0.9534 2.2321 11 1 5.8122 1.0331 1.2288 12 6 6.0649 1.5829 3.2759 13 7 5.5876 1.4861 4.4975 14 14 7.6160 2.5732 2.9548 15 1 7.2513 3.9817 2.6574 16 1 8.4879 2.5307 4.1560 17 1 8.3416 1.9944 1.7956 18 6 4.2801 -1.3716 2.4334 19 6 3.4158 -2.1797 3.4034 20 6 5.6525 -1.9694 2.1172 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 1.7517 -1.7715 1.2055 26 1 1.6054 -0.2617 2.1370 27 1 6.0413 1.9287 5.2319 28 1 2.8611 -2.9379 2.8507 29 1 4.0543 -2.6631 4.1428 30 1 2.7161 -1.5134 3.9081 31 1 6.3070 -1.1901 1.7268 32 1 6.0858 -2.3858 3.0265 33 1 5.5425 -2.7581 1.3729 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213338268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = -57.426870 kcal Electronic energy + Delta-G solvation = -13032.317431 eV Core-core repulsion = 10864.759157 eV Total energy + Delta-G solvation = -2167.558274 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.20325 -36.53227 -32.36360 -31.37022 -28.65435 -27.36882 -26.03511 -24.37331 -21.33687 -19.40450 -17.75648 -16.27548 -15.79588 -15.20365 -14.56513 -14.00954 -13.38908 -12.94216 -12.69887 -12.47963 -11.92833 -11.83832 -11.49130 -11.45523 -11.05818 -10.91644 -10.85350 -10.71543 -10.43871 -10.27209 -9.91867 -9.66422 -9.19846 -8.71208 -8.12395 -7.87369 -6.03840 -4.01536 3.30339 3.37301 3.40983 4.42086 4.71219 4.92310 5.18979 5.37891 5.47350 5.57387 5.85944 5.97096 5.97953 6.13592 6.18436 6.31875 6.38444 6.48512 6.51708 6.68256 6.76169 6.78395 6.91703 7.15469 7.22663 7.31395 7.66657 7.71236 7.93830 7.97836 8.50225 8.98848 9.57365 11.06547 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034928 B = 0.010125 C = 0.009146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.457719 B = 2764.874036 C = 3060.584751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.100 0.900 4 O -0.563 6.563 5 C -0.108 4.108 6 C -0.177 4.177 7 H 0.090 0.910 8 C 0.048 3.952 9 H 0.069 0.931 10 C -0.487 4.487 11 H 0.058 0.942 12 C 0.067 3.933 13 N -0.885 5.885 14 Si 0.890 3.110 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.162 4.162 19 C -0.098 4.098 20 C -0.095 4.095 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.366 0.634 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.261 0.739 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -4.738 -4.973 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.044 3.956 3 H 0.118 0.882 4 O -0.367 6.367 5 C -0.146 4.146 6 C -0.195 4.195 7 H 0.109 0.891 8 C 0.029 3.971 9 H 0.087 0.913 10 C -0.525 4.525 11 H 0.076 0.924 12 C -0.136 4.136 13 N -0.522 5.522 14 Si 0.718 3.282 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.163 4.163 19 C -0.155 4.155 20 C -0.152 4.152 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.212 0.788 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.548 -4.085 -4.878 9.130 hybrid contribution 0.521 -0.089 0.165 0.553 sum -6.027 -4.174 -4.714 8.716 Atomic orbital electron populations 1.22519 0.97477 1.01860 1.02247 1.21935 0.91484 0.97336 0.84812 0.88217 1.86590 1.77490 1.28341 1.44309 1.21744 0.96319 0.99082 0.97458 1.22426 0.91778 1.10224 0.95070 0.89148 1.20173 0.96555 0.87544 0.92802 0.91277 1.20621 1.08430 1.29650 0.93760 0.92421 1.25006 0.97465 0.95990 0.95100 1.69974 1.39732 1.43194 0.99270 0.86621 0.83243 0.80530 0.77814 1.20581 1.21197 1.19750 1.21673 0.95504 0.99104 1.00046 1.21153 0.98430 0.98310 0.97630 1.21078 0.96039 0.99162 0.98879 0.91705 0.92412 0.92832 0.78751 0.93034 0.91741 0.92968 0.94762 0.93632 0.93554 0.91239 0.94255 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.53 37.16 0.35 -1.90 16 2 C 0.10 1.60 3.57 -26.74 -0.10 1.50 16 3 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 4 O -0.56 -8.86 12.85 -35.23 -0.45 -9.31 16 5 C -0.11 -1.87 4.25 -26.73 -0.11 -1.98 16 6 C -0.18 -3.77 5.04 -90.63 -0.46 -4.23 16 7 H 0.09 2.06 7.75 -51.93 -0.40 1.66 16 8 C 0.05 1.21 4.81 -91.74 -0.44 0.77 16 9 H 0.07 1.89 7.81 -51.93 -0.41 1.49 16 10 C -0.49 -13.47 7.37 -34.44 -0.25 -13.73 16 11 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 12 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 13 N -0.88 -25.76 13.20 55.43 0.73 -25.03 16 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.16 -3.62 2.70 -154.47 -0.42 -4.04 16 19 C -0.10 -1.92 8.86 37.16 0.33 -1.59 16 20 C -0.09 -2.05 9.59 37.16 0.36 -1.70 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.37 4.33 9.05 45.56 0.41 4.74 16 25 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 26 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 29 H 0.04 0.87 7.99 -51.93 -0.42 0.46 16 30 H 0.05 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.07 1.64 6.47 -51.93 -0.34 1.30 16 32 H 0.04 0.82 8.02 -51.93 -0.42 0.41 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 273.41 15.07 4.12 4.12 Total: -1.00 -29.35 273.41 -6.31 -35.66 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.85 Total: 3.31 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -0.84 Total: -25.11 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.73 Total: -25.03 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.45 Total: -9.31 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.35 -6.31 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213338268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.764 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds