Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47027 * 240.00809 * 2 1 3 5 5 H 1.09004 * 109.47003 * 173.72853 * 4 2 1 6 6 C 1.50710 * 109.46772 * 293.72717 * 4 2 1 7 7 H 1.07993 * 120.00081 * 115.74388 * 6 4 2 8 8 C 1.37877 * 119.99682 * 295.73967 * 6 4 2 9 9 N 1.31514 * 120.00237 * 3.74934 * 8 6 4 10 10 Si 1.86799 * 119.99843 * 183.74857 * 8 6 4 11 11 H 1.48498 * 109.47094 * 59.99895 * 10 8 6 12 12 H 1.48498 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46933 * 300.00100 * 10 8 6 14 14 C 1.52994 * 109.47518 * 53.72487 * 4 2 1 15 15 H 1.09007 * 109.82256 * 304.38458 * 14 4 2 16 16 C 1.54380 * 109.83286 * 183.40086 * 14 4 2 17 17 C 1.55303 * 102.25244 * 219.12876 * 16 14 4 18 18 C 1.54946 * 100.94168 * 34.13723 * 17 16 14 19 19 O 1.43236 * 109.83143 * 65.26676 * 14 4 2 20 20 H 1.09000 * 109.47430 * 54.61198 * 1 2 3 21 21 H 1.09001 * 109.46733 * 174.61275 * 1 2 3 22 22 H 1.08997 * 109.46974 * 294.60937 * 1 2 3 23 23 H 1.08998 * 109.47404 * 120.00387 * 2 1 3 24 24 H 1.09005 * 109.46776 * 70.23799 * 3 2 1 25 25 H 1.08995 * 109.47319 * 190.23563 * 3 2 1 26 26 H 1.09000 * 109.47108 * 310.23649 * 3 2 1 27 27 H 0.97003 * 119.99856 * 179.97438 * 9 8 6 28 28 H 1.08995 * 110.84782 * 337.32056 * 16 14 4 29 29 H 1.09001 * 110.84738 * 100.94172 * 16 14 4 30 30 H 1.08999 * 111.12651 * 276.21184 * 17 16 14 31 31 H 1.09007 * 111.12243 * 152.05039 * 17 16 14 32 32 H 1.09009 * 110.30519 * 204.64020 * 18 17 16 33 33 H 1.08994 * 110.39668 * 82.51527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 1 3.1243 -0.6249 -1.3073 6 6 1.6684 -2.1797 -1.1743 7 1 0.9871 -2.6013 -1.8985 8 6 2.1982 -2.9758 -0.1811 9 7 2.9692 -2.4474 0.7441 10 14 1.8210 -4.8051 -0.1496 11 1 2.3028 -5.4315 -1.4069 12 1 2.5050 -5.4316 1.0100 13 1 0.3548 -5.0060 -0.0266 14 6 1.4054 -0.0965 -2.4935 15 1 0.3191 -0.1199 -2.4058 16 6 1.8479 -0.8724 -3.7528 17 6 2.0566 0.2680 -4.7861 18 6 2.5790 1.4031 -3.8699 19 8 1.8521 1.2565 -2.6397 20 1 -0.3634 0.5951 -0.8378 21 1 -0.3633 -1.0232 -0.0965 22 1 -0.3633 0.4279 0.9343 23 1 1.8934 -0.5139 0.8899 24 1 1.8335 1.9009 0.9672 25 1 3.1146 1.4480 -0.1826 26 1 1.5353 2.0063 -0.7845 27 1 3.3417 -3.0075 1.4430 28 1 2.7802 -1.4070 -3.5714 29 1 1.0653 -1.5559 -4.0822 30 1 1.1150 0.5467 -5.2591 31 1 2.8018 -0.0092 -5.5319 32 1 2.3731 2.3755 -4.3175 33 1 3.6484 1.2873 -3.6937 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213910544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -68.216084 kcal Electronic energy + Delta-G solvation = -13692.954653 eV Core-core repulsion = 11524.928524 eV Total energy + Delta-G solvation = -2168.026129 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.88665 -35.28681 -32.06405 -31.33444 -29.19620 -26.17251 -25.83188 -23.13710 -21.22931 -20.46700 -18.15840 -16.53940 -15.60166 -15.25589 -14.52015 -13.57095 -13.23141 -12.99848 -12.80305 -12.26148 -12.04336 -11.34196 -11.28135 -10.95860 -10.90049 -10.69342 -10.54930 -10.51706 -10.15393 -9.90161 -9.77849 -9.46573 -9.14026 -8.70265 -8.34016 -8.08857 -5.94848 -4.00514 3.32392 3.37835 3.39577 4.42000 4.69215 5.22551 5.35336 5.40867 5.61623 5.91680 6.03370 6.18371 6.24077 6.36173 6.45266 6.50059 6.54207 6.68485 6.73882 6.87926 7.00053 7.06353 7.17989 7.28175 7.57572 7.65709 7.81980 7.92885 8.03895 8.27567 8.51607 9.02779 9.62491 11.11006 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.013837 C = 0.011233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.126719 B = 2023.073383 C = 2492.070442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.135 4.135 4 C 0.052 3.948 5 H 0.029 0.971 6 C -0.508 4.508 7 H 0.054 0.946 8 C 0.064 3.936 9 N -0.886 5.886 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.084 3.916 15 H 0.067 0.933 16 C -0.134 4.134 17 C -0.162 4.162 18 C 0.049 3.951 19 O -0.378 6.378 20 H 0.034 0.966 21 H 0.056 0.944 22 H 0.023 0.977 23 H 0.093 0.907 24 H 0.020 0.980 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.260 0.740 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 4.290 -6.472 7.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.192 4.192 4 C 0.033 3.967 5 H 0.047 0.953 6 C -0.546 4.546 7 H 0.072 0.928 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.027 3.973 15 H 0.085 0.915 16 C -0.172 4.172 17 C -0.200 4.200 18 C -0.027 4.027 19 O -0.298 6.298 20 H 0.053 0.947 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.111 0.889 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.709 4.393 -6.151 7.750 hybrid contribution -0.098 -1.259 -0.086 1.266 sum -1.807 3.134 -6.237 7.210 Atomic orbital electron populations 1.21759 0.98060 1.00853 0.98090 1.21094 0.93374 0.93393 1.02945 1.21910 1.00296 0.98496 0.98507 1.19042 0.95796 0.93217 0.88654 0.95300 1.21000 1.27433 0.93469 1.12707 0.92802 1.24916 0.95260 0.98083 0.95518 1.69901 1.33294 1.35137 1.14125 0.86752 0.78431 0.85962 0.77389 1.20396 1.21413 1.20363 1.23105 0.98144 0.79587 0.96443 0.91524 1.23026 1.02817 0.97210 0.94111 1.23294 1.01010 0.97114 0.98550 1.23207 0.96138 0.97716 0.85686 1.88483 1.73095 1.29823 1.38390 0.94675 0.92495 0.95764 0.88905 0.96060 0.94322 0.92476 0.93037 0.90128 0.91322 0.91494 0.91166 0.91381 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.38 37.16 0.31 -2.55 16 2 C -0.09 -2.15 2.57 -90.61 -0.23 -2.38 16 3 C -0.13 -2.95 8.26 37.16 0.31 -2.64 16 4 C 0.05 1.27 1.30 -91.77 -0.12 1.15 16 5 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 6 C -0.51 -13.39 6.73 -34.44 -0.23 -13.62 16 7 H 0.05 1.39 7.41 -52.49 -0.39 1.00 16 8 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 9 N -0.89 -25.19 11.47 55.43 0.64 -24.56 16 10 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.08 1.77 2.64 -26.01 -0.07 1.71 16 15 H 0.07 1.44 6.22 -51.92 -0.32 1.11 16 16 C -0.13 -2.51 5.55 -24.79 -0.14 -2.65 16 17 C -0.16 -2.47 7.16 -24.48 -0.18 -2.64 16 18 C 0.05 0.81 7.78 38.18 0.30 1.11 16 19 O -0.38 -7.66 7.84 -35.23 -0.28 -7.93 16 20 H 0.03 0.72 6.53 -51.93 -0.34 0.38 16 21 H 0.06 1.31 7.27 -51.93 -0.38 0.93 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 2.54 6.15 -51.93 -0.32 2.22 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.06 1.21 5.94 -51.93 -0.31 0.90 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.08 1.63 7.74 -51.93 -0.40 1.23 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 254.58 15.07 3.84 3.84 Total: -1.00 -27.71 254.58 -6.36 -34.07 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.39 Total: -0.54 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -0.14 Total: -20.88 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.64 Total: -24.56 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.28 Total: -7.93 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.71 -6.36 -34.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.141 kcal (2) G-P(sol) polarization free energy of solvation -27.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds