Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47027 * 240.00809 * 2 1 3 5 5 H 1.09004 * 109.47003 * 173.72853 * 4 2 1 6 6 C 1.50710 * 109.46772 * 293.72717 * 4 2 1 7 7 H 1.07993 * 120.00081 * 115.74388 * 6 4 2 8 8 C 1.37877 * 119.99682 * 295.73967 * 6 4 2 9 9 N 1.31514 * 120.00237 * 3.74934 * 8 6 4 10 10 Si 1.86799 * 119.99843 * 183.74857 * 8 6 4 11 11 H 1.48498 * 109.47094 * 59.99895 * 10 8 6 12 12 H 1.48498 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46933 * 300.00100 * 10 8 6 14 14 C 1.52994 * 109.47518 * 53.72487 * 4 2 1 15 15 H 1.09007 * 109.82256 * 304.38458 * 14 4 2 16 16 C 1.54380 * 109.83286 * 183.40086 * 14 4 2 17 17 C 1.55303 * 102.25244 * 219.12876 * 16 14 4 18 18 C 1.54946 * 100.94168 * 34.13723 * 17 16 14 19 19 O 1.43236 * 109.83143 * 65.26676 * 14 4 2 20 20 H 1.09000 * 109.47430 * 54.61198 * 1 2 3 21 21 H 1.09001 * 109.46733 * 174.61275 * 1 2 3 22 22 H 1.08997 * 109.46974 * 294.60937 * 1 2 3 23 23 H 1.08998 * 109.47404 * 120.00387 * 2 1 3 24 24 H 1.09005 * 109.46776 * 70.23799 * 3 2 1 25 25 H 1.08995 * 109.47319 * 190.23563 * 3 2 1 26 26 H 1.09000 * 109.47108 * 310.23649 * 3 2 1 27 27 H 0.97003 * 119.99856 * 179.97438 * 9 8 6 28 28 H 1.08995 * 110.84782 * 337.32056 * 16 14 4 29 29 H 1.09001 * 110.84738 * 100.94172 * 16 14 4 30 30 H 1.08999 * 111.12651 * 276.21184 * 17 16 14 31 31 H 1.09007 * 111.12243 * 152.05039 * 17 16 14 32 32 H 1.09009 * 110.30519 * 204.64020 * 18 17 16 33 33 H 1.08994 * 110.39668 * 82.51527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 1 3.1243 -0.6249 -1.3073 6 6 1.6684 -2.1797 -1.1743 7 1 0.9871 -2.6013 -1.8985 8 6 2.1982 -2.9758 -0.1811 9 7 2.9692 -2.4474 0.7441 10 14 1.8210 -4.8051 -0.1496 11 1 2.3028 -5.4315 -1.4069 12 1 2.5050 -5.4316 1.0100 13 1 0.3548 -5.0060 -0.0266 14 6 1.4054 -0.0965 -2.4935 15 1 0.3191 -0.1199 -2.4058 16 6 1.8479 -0.8724 -3.7528 17 6 2.0566 0.2680 -4.7861 18 6 2.5790 1.4031 -3.8699 19 8 1.8521 1.2565 -2.6397 20 1 -0.3634 0.5951 -0.8378 21 1 -0.3633 -1.0232 -0.0965 22 1 -0.3633 0.4279 0.9343 23 1 1.8934 -0.5139 0.8899 24 1 1.8335 1.9009 0.9672 25 1 3.1146 1.4480 -0.1826 26 1 1.5353 2.0063 -0.7845 27 1 3.3417 -3.0075 1.4430 28 1 2.7802 -1.4070 -3.5714 29 1 1.0653 -1.5559 -4.0822 30 1 1.1150 0.5467 -5.2591 31 1 2.8018 -0.0092 -5.5319 32 1 2.3731 2.3755 -4.3175 33 1 3.6484 1.2873 -3.6937 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213910544.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -83.717729 kcal Electronic energy + Delta-G solvation = -13693.626855 eV Core-core repulsion = 11524.928524 eV Total energy + Delta-G solvation = -2168.698331 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.46049 -37.10103 -34.04176 -32.87458 -30.85122 -27.96960 -27.63291 -25.02107 -22.63969 -22.09768 -20.02688 -18.37851 -17.23850 -16.94744 -16.36899 -15.20022 -14.92556 -14.75586 -14.41385 -13.97436 -13.73164 -13.15847 -12.92810 -12.78196 -12.76338 -12.32403 -12.18999 -12.03538 -11.84600 -11.60294 -11.48517 -11.32317 -10.98651 -10.60472 -10.32686 -9.87161 -8.02506 -6.14206 1.43621 1.43908 1.51059 2.45458 3.22419 3.25807 3.87130 4.13024 4.19342 4.44005 4.55429 4.65052 4.68458 4.70604 4.93033 4.98616 5.00862 5.03847 5.16136 5.19856 5.27534 5.28830 5.43264 5.46296 5.68024 5.76389 5.85200 6.03021 6.19740 6.38518 6.55194 6.97671 7.51866 9.02456 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.013837 C = 0.011233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.126719 B = 2023.073383 C = 2492.070442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.094 4.094 3 C -0.122 4.122 4 C 0.053 3.947 5 H -0.015 1.015 6 C -0.512 4.512 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.271 1.271 12 H -0.290 1.290 13 H -0.271 1.271 14 C 0.089 3.911 15 H 0.067 0.933 16 C -0.137 4.137 17 C -0.146 4.146 18 C 0.039 3.961 19 O -0.394 6.394 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.257 0.743 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 4.671 -7.982 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.113 4.113 3 C -0.179 4.179 4 C 0.034 3.966 5 H 0.004 0.996 6 C -0.550 4.550 7 H 0.075 0.925 8 C -0.185 4.185 9 N -0.558 5.558 10 Si 0.773 3.227 11 H -0.196 1.196 12 H -0.216 1.216 13 H -0.196 1.196 14 C 0.032 3.968 15 H 0.085 0.915 16 C -0.175 4.175 17 C -0.183 4.183 18 C -0.037 4.037 19 O -0.314 6.314 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.785 4.779 -7.680 9.464 hybrid contribution 0.276 -1.329 0.373 1.408 sum -2.509 3.451 -7.306 8.461 Atomic orbital electron populations 1.21629 0.96152 1.00306 0.99614 1.21031 0.95001 0.94258 1.01007 1.21762 0.99259 0.97215 0.99705 1.18950 0.93350 0.93218 0.91073 0.99644 1.21295 1.26879 0.94546 1.12256 0.92477 1.25669 0.95365 1.02146 0.95366 1.70062 1.34553 1.36392 1.14791 0.85787 0.78416 0.81135 0.77369 1.19629 1.21628 1.19613 1.22857 0.97608 0.80488 0.95825 0.91507 1.22971 1.01812 0.98263 0.94420 1.23252 1.02734 0.94553 0.97784 1.23489 0.95600 0.99934 0.84693 1.88428 1.73506 1.28849 1.40647 0.93096 0.94062 0.94174 0.92624 0.94574 0.95825 0.91407 0.93383 0.92490 0.90448 0.89406 0.88784 0.88238 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.38 71.98 0.60 -4.55 16 2 C -0.09 -4.58 2.57 -10.79 -0.03 -4.61 16 3 C -0.12 -5.31 8.26 71.98 0.59 -4.71 16 4 C 0.05 2.66 1.30 -11.54 -0.01 2.64 16 5 H -0.01 -0.85 8.09 -2.38 -0.02 -0.87 16 6 C -0.51 -27.30 6.73 25.60 0.17 -27.12 16 7 H 0.06 2.94 7.41 -2.91 -0.02 2.92 16 8 C 0.01 0.70 5.33 84.65 0.45 1.16 16 9 N -0.92 -53.80 11.47 21.45 0.25 -53.55 16 10 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 14 C 0.09 3.70 2.64 31.06 0.08 3.79 16 15 H 0.07 2.78 6.22 -2.38 -0.01 2.76 16 16 C -0.14 -4.95 5.55 31.85 0.18 -4.77 16 17 C -0.15 -3.97 7.16 32.05 0.23 -3.74 16 18 C 0.04 1.19 7.78 72.65 0.56 1.75 16 19 O -0.39 -15.36 7.84 -148.98 -1.17 -16.53 16 20 H 0.05 2.00 6.53 -2.39 -0.02 1.99 16 21 H 0.04 1.87 7.27 -2.39 -0.02 1.85 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 24 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 26 H 0.07 2.79 5.94 -2.39 -0.01 2.77 16 27 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 29 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -60.00 254.58 5.00 -55.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.06 Total: 9.79 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 2.83 Total: -40.17 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.25 Total: -53.55 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.17 Total: -16.53 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -60.00 5.00 -55.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910544.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.711 kcal (2) G-P(sol) polarization free energy of solvation -60.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds