Wall clock time and date at job start Mon Mar 30 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47314 * 2 1 4 4 C 1.52994 * 109.47689 * 120.00338 * 2 1 3 5 5 H 1.09005 * 109.47055 * 305.85092 * 4 2 1 6 6 C 1.50700 * 109.47779 * 185.84774 * 4 2 1 7 7 H 1.08000 * 119.99434 * 298.25496 * 6 4 2 8 8 C 1.37872 * 119.99942 * 118.25131 * 6 4 2 9 9 N 1.31516 * 120.00212 * 6.39397 * 8 6 4 10 10 Si 1.86797 * 119.99867 * 186.39759 * 8 6 4 11 11 H 1.48496 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47505 * 120.00165 * 10 8 6 13 13 H 1.48511 * 109.47179 * 240.00170 * 10 8 6 14 14 C 1.53005 * 109.47094 * 65.84571 * 4 2 1 15 15 H 1.09008 * 110.54968 * 307.88323 * 14 4 2 16 16 C 1.54996 * 110.61677 * 185.00714 * 14 4 2 17 17 C 1.54818 * 102.08701 * 204.47605 * 16 14 4 18 18 C 1.54091 * 104.19063 * 20.87790 * 17 16 14 19 19 O 1.43746 * 107.42115 * 1.95555 * 18 17 16 20 20 H 1.09001 * 109.46634 * 299.99625 * 1 2 3 21 21 H 1.09001 * 109.47159 * 59.99654 * 1 2 3 22 22 H 1.08992 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46952 * 240.00294 * 2 1 3 24 24 H 1.08997 * 109.47049 * 181.06528 * 3 2 1 25 25 H 1.08999 * 109.47296 * 301.06448 * 3 2 1 26 26 H 1.08995 * 109.47142 * 61.06107 * 3 2 1 27 27 H 0.97000 * 120.00102 * 179.97438 * 9 8 6 28 28 H 1.08994 * 110.91212 * 86.27993 * 16 14 4 29 29 H 1.08994 * 110.90514 * 322.66951 * 16 14 4 30 30 H 1.08999 * 110.48661 * 262.19950 * 17 16 14 31 31 H 1.08997 * 110.48520 * 139.55877 * 17 16 14 32 32 H 1.09001 * 109.88092 * 121.45205 * 18 17 16 33 33 H 1.09000 * 109.87914 * 242.45555 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.5938 -0.2715 2.1361 6 6 3.5401 -0.5972 1.3236 7 1 4.1559 -1.0142 0.5405 8 6 4.1262 0.0488 2.3915 9 7 3.3885 0.4455 3.4054 10 14 5.9679 0.3604 2.3980 11 1 6.5659 -0.1800 1.1508 12 1 6.2226 1.8213 2.4769 13 1 6.5798 -0.3128 3.5718 14 6 1.6536 -2.2000 1.1778 15 1 0.5863 -2.3076 0.9839 16 6 2.0470 -2.9307 2.4868 17 6 2.1876 -4.3969 2.0100 18 6 2.4014 -4.2804 0.4885 19 8 2.4270 -2.8805 0.1634 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1298 1.4425 -0.0191 25 1 1.6612 1.9618 -0.8803 26 1 1.6923 1.9508 0.8993 27 1 3.8009 0.8997 4.1568 28 1 1.2599 -2.8389 3.2352 29 1 2.9945 -2.5545 2.8726 30 1 1.2779 -4.9571 2.2257 31 1 3.0490 -4.8703 2.4812 32 1 3.3486 -4.7427 0.2108 33 1 1.5821 -4.7686 -0.0393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213910610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:12 Heat of formation + Delta-G solvation = -70.585373 kcal Electronic energy + Delta-G solvation = -13624.274988 eV Core-core repulsion = 11456.146119 eV Total energy + Delta-G solvation = -2168.128869 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.57144 -35.37287 -32.14988 -31.10952 -29.24314 -26.60036 -25.46412 -23.28719 -21.11073 -20.02647 -18.49020 -16.47757 -15.37783 -15.05486 -14.40217 -14.00579 -13.34883 -13.21412 -12.52937 -12.23534 -11.75545 -11.38061 -11.26261 -11.13600 -10.86792 -10.78532 -10.55947 -10.52827 -10.07252 -9.90991 -9.79163 -9.19509 -9.03149 -8.83010 -8.44429 -8.27566 -5.93340 -3.88836 3.33866 3.42970 3.49043 4.51854 4.89235 5.35084 5.46216 5.49592 5.76268 5.94334 6.04941 6.11589 6.17372 6.25973 6.36541 6.38592 6.55591 6.60484 6.73716 6.77975 6.82098 6.89173 7.22764 7.30130 7.37264 7.50825 7.70719 7.79512 8.02754 8.07485 8.61628 9.21676 9.70635 11.16405 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.016935 C = 0.012201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.248562 B = 1652.938625 C = 2294.379140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.122 4.122 4 C 0.039 3.961 5 H 0.078 0.922 6 C -0.480 4.480 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.899 5.899 10 Si 0.880 3.120 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.287 1.287 14 C 0.087 3.913 15 H 0.036 0.964 16 C -0.135 4.135 17 C -0.157 4.157 18 C 0.048 3.952 19 O -0.362 6.362 20 H 0.046 0.954 21 H 0.035 0.965 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.020 0.980 26 H 0.044 0.956 27 H 0.258 0.742 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -4.792 -2.742 6.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.179 4.179 4 C 0.021 3.979 5 H 0.097 0.903 6 C -0.518 4.518 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.539 5.539 10 Si 0.709 3.291 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.214 1.214 14 C 0.030 3.970 15 H 0.054 0.946 16 C -0.172 4.172 17 C -0.195 4.195 18 C -0.030 4.030 19 O -0.281 6.281 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.495 -4.596 -2.749 6.395 hybrid contribution 0.894 -0.045 0.320 0.950 sum -2.602 -4.641 -2.428 5.849 Atomic orbital electron populations 1.21950 0.98307 1.00109 0.99984 1.21190 0.92188 0.96541 1.00647 1.21582 1.02043 0.95861 0.98436 1.19153 0.97020 0.87122 0.94649 0.90346 1.20962 0.91107 1.33772 1.05964 0.92410 1.24924 0.97278 0.95952 0.95616 1.69897 1.34984 1.41175 1.07803 0.86719 0.86717 0.77822 0.77886 1.19751 1.21191 1.21379 1.23528 0.91704 0.96814 0.84987 0.94581 1.23019 1.03714 0.92228 0.98288 1.22931 1.00980 0.99052 0.96554 1.22934 0.99862 0.85854 0.94337 1.88961 1.73705 1.15862 1.49538 0.93478 0.94579 0.93764 0.92895 0.91880 0.96087 0.93679 0.93250 0.92267 0.88609 0.92296 0.91649 0.91400 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.98 37.16 0.33 -2.41 16 2 C -0.09 -1.90 2.48 -90.63 -0.22 -2.13 16 3 C -0.12 -2.64 8.84 37.16 0.33 -2.31 16 4 C 0.04 0.95 1.62 -91.77 -0.15 0.80 16 5 H 0.08 2.10 6.93 -51.93 -0.36 1.74 16 6 C -0.48 -12.81 5.22 -34.44 -0.18 -12.99 16 7 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 8 C 0.06 1.69 5.44 -17.82 -0.10 1.59 16 9 N -0.90 -25.16 12.62 55.43 0.70 -24.46 16 10 Si 0.88 21.38 29.54 -169.99 -5.02 16.35 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.09 1.91 2.89 -25.67 -0.07 1.83 16 15 H 0.04 0.75 6.35 -51.92 -0.33 0.42 16 16 C -0.13 -2.80 6.50 -24.72 -0.16 -2.96 16 17 C -0.16 -2.69 7.01 -25.20 -0.18 -2.87 16 18 C 0.05 0.86 7.69 37.73 0.29 1.15 16 19 O -0.36 -8.09 10.24 -35.23 -0.36 -8.45 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.79 6.46 -51.93 -0.34 0.46 16 23 H 0.05 1.21 7.94 -51.92 -0.41 0.79 16 24 H 0.06 1.47 7.10 -51.93 -0.37 1.10 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 2.30 7.14 -51.93 -0.37 1.93 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 261.51 15.07 3.94 3.94 Total: -1.00 -27.72 261.51 -6.37 -34.09 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.52 Total: -1.17 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.11 Total: -20.30 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.70 Total: -24.46 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.36 Total: -8.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.72 -6.37 -34.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.500 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds