Wall clock time and date at job start Mon Mar 30 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47314 * 2 1 4 4 C 1.52994 * 109.47689 * 120.00338 * 2 1 3 5 5 H 1.09005 * 109.47055 * 305.85092 * 4 2 1 6 6 C 1.50700 * 109.47779 * 185.84774 * 4 2 1 7 7 H 1.08000 * 119.99434 * 298.25496 * 6 4 2 8 8 C 1.37872 * 119.99942 * 118.25131 * 6 4 2 9 9 N 1.31516 * 120.00212 * 6.39397 * 8 6 4 10 10 Si 1.86797 * 119.99867 * 186.39759 * 8 6 4 11 11 H 1.48496 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47505 * 120.00165 * 10 8 6 13 13 H 1.48511 * 109.47179 * 240.00170 * 10 8 6 14 14 C 1.53005 * 109.47094 * 65.84571 * 4 2 1 15 15 H 1.09008 * 110.54968 * 307.88323 * 14 4 2 16 16 C 1.54996 * 110.61677 * 185.00714 * 14 4 2 17 17 C 1.54818 * 102.08701 * 204.47605 * 16 14 4 18 18 C 1.54091 * 104.19063 * 20.87790 * 17 16 14 19 19 O 1.43746 * 107.42115 * 1.95555 * 18 17 16 20 20 H 1.09001 * 109.46634 * 299.99625 * 1 2 3 21 21 H 1.09001 * 109.47159 * 59.99654 * 1 2 3 22 22 H 1.08992 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46952 * 240.00294 * 2 1 3 24 24 H 1.08997 * 109.47049 * 181.06528 * 3 2 1 25 25 H 1.08999 * 109.47296 * 301.06448 * 3 2 1 26 26 H 1.08995 * 109.47142 * 61.06107 * 3 2 1 27 27 H 0.97000 * 120.00102 * 179.97438 * 9 8 6 28 28 H 1.08994 * 110.91212 * 86.27993 * 16 14 4 29 29 H 1.08994 * 110.90514 * 322.66951 * 16 14 4 30 30 H 1.08999 * 110.48661 * 262.19950 * 17 16 14 31 31 H 1.08997 * 110.48520 * 139.55877 * 17 16 14 32 32 H 1.09001 * 109.88092 * 121.45205 * 18 17 16 33 33 H 1.09000 * 109.87914 * 242.45555 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.5938 -0.2715 2.1361 6 6 3.5401 -0.5972 1.3236 7 1 4.1559 -1.0142 0.5405 8 6 4.1262 0.0488 2.3915 9 7 3.3885 0.4455 3.4054 10 14 5.9679 0.3604 2.3980 11 1 6.5659 -0.1800 1.1508 12 1 6.2226 1.8213 2.4769 13 1 6.5798 -0.3128 3.5718 14 6 1.6536 -2.2000 1.1778 15 1 0.5863 -2.3076 0.9839 16 6 2.0470 -2.9307 2.4868 17 6 2.1876 -4.3969 2.0100 18 6 2.4014 -4.2804 0.4885 19 8 2.4270 -2.8805 0.1634 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1298 1.4425 -0.0191 25 1 1.6612 1.9618 -0.8803 26 1 1.6923 1.9508 0.8993 27 1 3.8009 0.8997 4.1568 28 1 1.2599 -2.8389 3.2352 29 1 2.9945 -2.5545 2.8726 30 1 1.2779 -4.9571 2.2257 31 1 3.0490 -4.8703 2.4812 32 1 3.3486 -4.7427 0.2108 33 1 1.5821 -4.7686 -0.0393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213910610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:12 Heat of formation + Delta-G solvation = -86.297252 kcal Electronic energy + Delta-G solvation = -13624.956307 eV Core-core repulsion = 11456.146119 eV Total energy + Delta-G solvation = -2168.810187 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21020 -37.12695 -34.15616 -32.69918 -30.92904 -28.35464 -27.20396 -25.14132 -22.64107 -21.67850 -20.28893 -18.46952 -16.99946 -16.74625 -16.29561 -15.62059 -15.06938 -14.88901 -14.13829 -13.99826 -13.48852 -13.27317 -12.94161 -12.77651 -12.75408 -12.42792 -12.33533 -12.06201 -11.84127 -11.66667 -11.45886 -10.93485 -10.82984 -10.79728 -10.38107 -10.07008 -8.02460 -6.01420 1.37577 1.42278 1.52240 2.48888 3.25300 3.37370 3.95286 4.11486 4.28441 4.34414 4.46568 4.49881 4.63066 4.68994 4.93038 4.95993 4.99059 5.04585 5.11172 5.14905 5.24273 5.26649 5.45381 5.52013 5.61597 5.71621 5.84058 5.93709 5.99344 6.31648 6.64918 7.10669 7.59299 9.06797 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.016935 C = 0.012201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.248562 B = 1652.938625 C = 2294.379140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 C -0.116 4.116 4 C 0.037 3.963 5 H 0.050 0.950 6 C -0.477 4.477 7 H 0.037 0.963 8 C 0.023 3.977 9 N -0.924 5.924 10 Si 0.928 3.072 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.285 1.285 14 C 0.088 3.912 15 H 0.054 0.946 16 C -0.137 4.137 17 C -0.146 4.146 18 C 0.039 3.961 19 O -0.392 6.392 20 H 0.044 0.956 21 H 0.059 0.941 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.257 0.743 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.388 -5.775 -3.455 8.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.173 4.173 4 C 0.018 3.982 5 H 0.068 0.932 6 C -0.516 4.516 7 H 0.055 0.945 8 C -0.175 4.175 9 N -0.565 5.565 10 Si 0.756 3.244 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.211 1.211 14 C 0.031 3.969 15 H 0.072 0.928 16 C -0.175 4.175 17 C -0.184 4.184 18 C -0.038 4.038 19 O -0.311 6.311 20 H 0.063 0.937 21 H 0.078 0.922 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.256 -5.588 -3.469 7.834 hybrid contribution 1.129 0.229 0.504 1.258 sum -3.127 -5.359 -2.965 6.876 Atomic orbital electron populations 1.21839 0.95459 1.01094 1.01089 1.21135 0.94665 0.96004 0.98860 1.21501 1.00424 0.96200 0.99170 1.19072 0.95358 0.89242 0.94543 0.93213 1.21003 0.92497 1.33085 1.05024 0.94498 1.25424 1.00327 0.96186 0.95518 1.69990 1.36117 1.42130 1.08226 0.85958 0.83120 0.77685 0.77644 1.19906 1.20851 1.21077 1.23394 0.92504 0.95359 0.85680 0.92811 1.22921 1.01785 0.94812 0.98018 1.22899 1.03026 0.96664 0.95819 1.23213 1.01645 0.83766 0.95147 1.88911 1.74061 1.18361 1.49806 0.93659 0.92156 0.92861 0.93829 0.94357 0.92999 0.95051 0.93379 0.91482 0.92645 0.89180 0.90695 0.90393 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 8.98 71.98 0.65 -4.22 16 2 C -0.09 -3.80 2.48 -10.80 -0.03 -3.82 16 3 C -0.12 -4.97 8.84 71.98 0.64 -4.33 16 4 C 0.04 1.79 1.62 -11.54 -0.02 1.77 16 5 H 0.05 2.71 6.93 -2.38 -0.02 2.70 16 6 C -0.48 -26.03 5.22 25.60 0.13 -25.89 16 7 H 0.04 2.13 7.62 -2.91 -0.02 2.11 16 8 C 0.02 1.26 5.44 84.65 0.46 1.72 16 9 N -0.92 -52.80 12.62 21.45 0.27 -52.53 16 10 Si 0.93 44.51 29.54 68.60 2.03 46.54 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 14 C 0.09 3.78 2.89 31.28 0.09 3.87 16 15 H 0.05 2.13 6.35 -2.38 -0.02 2.11 16 16 C -0.14 -5.62 6.50 31.90 0.21 -5.42 16 17 C -0.15 -4.62 7.01 31.58 0.22 -4.40 16 18 C 0.04 1.30 7.69 72.35 0.56 1.86 16 19 O -0.39 -17.08 10.24 -148.98 -1.53 -18.61 16 20 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 22 H 0.05 1.77 6.46 -2.39 -0.02 1.75 16 23 H 0.04 1.96 7.94 -2.38 -0.02 1.94 16 24 H 0.04 1.79 7.10 -2.39 -0.02 1.77 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.05 2.70 7.14 -2.39 -0.02 2.68 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -59.65 261.51 4.73 -54.92 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.05 Total: 8.55 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 2.91 Total: -38.88 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.27 Total: -52.53 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.53 Total: -18.61 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -59.65 4.73 -54.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.375 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds