Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 C 1.53001 * 109.46971 * 119.99388 * 2 1 3 5 5 H 1.08998 * 109.46762 * 62.62470 * 4 2 1 6 6 C 1.50697 * 109.47209 * 182.62634 * 4 2 1 7 7 H 1.07995 * 120.00407 * 115.02743 * 6 4 2 8 8 C 1.37884 * 119.99891 * 295.03272 * 6 4 2 9 9 N 1.31514 * 119.99925 * 0.66816 * 8 6 4 10 10 Si 1.86799 * 119.99933 * 180.67729 * 8 6 4 11 11 H 1.48494 * 109.47239 * 89.99575 * 10 8 6 12 12 H 1.48495 * 109.46797 * 209.99771 * 10 8 6 13 13 H 1.48494 * 109.47239 * 329.99340 * 10 8 6 14 14 C 1.52998 * 109.47179 * 302.62807 * 4 2 1 15 15 H 1.08995 * 109.82531 * 53.93793 * 14 4 2 16 16 C 1.54387 * 109.83078 * 174.91868 * 14 4 2 17 17 C 1.55574 * 102.27396 * 140.86694 * 16 14 4 18 18 C 1.54949 * 100.82433 * 325.88509 * 17 16 14 19 19 O 1.43240 * 109.83122 * 293.05274 * 14 4 2 20 20 H 1.09003 * 109.46917 * 179.64797 * 1 2 3 21 21 H 1.08996 * 109.47438 * 299.65285 * 1 2 3 22 22 H 1.09004 * 109.46737 * 59.65875 * 1 2 3 23 23 H 1.08992 * 109.47265 * 239.99927 * 2 1 3 24 24 H 1.08994 * 109.46913 * 170.78848 * 3 2 1 25 25 H 1.09003 * 109.46822 * 290.78075 * 3 2 1 26 26 H 1.08995 * 109.47713 * 50.78436 * 3 2 1 27 27 H 0.96997 * 119.99906 * 179.97438 * 9 8 6 28 28 H 1.08992 * 110.84660 * 259.05842 * 16 14 4 29 29 H 1.09000 * 110.84427 * 22.48085 * 16 14 4 30 30 H 1.08999 * 111.22065 * 207.98536 * 17 16 14 31 31 H 1.08996 * 111.12864 * 83.74560 * 17 16 14 32 32 H 1.09003 * 110.30615 * 277.47311 * 18 17 16 33 33 H 1.08995 * 110.30511 * 155.40800 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7155 -1.7614 1.2262 6 6 3.5455 -0.6650 1.2824 7 1 4.0486 -0.1212 2.0682 8 6 4.2809 -1.3079 0.3092 9 7 3.6682 -1.9590 -0.6553 10 14 6.1474 -1.2542 0.3608 11 1 6.6540 -2.4039 1.1524 12 1 6.6831 -1.3310 -1.0221 13 1 6.5888 0.0149 0.9928 14 6 1.4767 -0.0390 2.4976 15 1 0.3905 0.0194 2.4287 16 6 1.8815 -0.8348 3.7571 17 6 2.1951 0.2973 4.7771 18 6 2.7847 1.3798 3.8381 19 8 2.0270 1.2776 2.6221 20 1 -0.3633 -1.0277 -0.0063 21 1 -0.3634 0.5084 0.8930 22 1 -0.3633 0.5192 -0.8870 23 1 1.8934 -0.5138 -0.8899 24 1 3.1174 1.4470 0.1645 25 1 1.8172 1.9066 -0.9608 26 1 1.5485 2.0017 0.7961 27 1 4.1855 -2.4110 -1.3401 28 1 1.0554 -1.4538 4.1069 29 1 2.7653 -1.4429 3.5643 30 1 2.9306 -0.0273 5.5131 31 1 1.2859 0.6515 5.2628 32 1 3.8388 1.1797 3.6452 33 1 2.6625 2.3694 4.2781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213910673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = -64.798371 kcal Electronic energy + Delta-G solvation = -13848.719530 eV Core-core repulsion = 11680.841604 eV Total energy + Delta-G solvation = -2167.877926 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.86047 -35.15059 -31.95753 -31.25714 -29.04459 -26.48207 -25.63268 -23.05354 -21.15417 -20.48787 -18.18642 -16.58647 -15.51067 -14.94736 -14.45774 -13.45978 -13.28281 -12.93974 -12.78742 -12.27024 -12.02495 -11.43295 -11.22644 -10.85103 -10.75446 -10.67818 -10.56463 -10.41310 -10.11224 -9.86551 -9.74530 -9.40334 -9.06465 -8.60018 -8.27907 -8.03786 -5.89323 -3.89687 3.34305 3.41964 3.45022 4.51477 4.76417 5.26867 5.42373 5.48443 5.72777 5.99099 6.02891 6.23205 6.32549 6.34487 6.37309 6.48623 6.50943 6.63903 6.77122 6.88082 6.99823 7.08893 7.13796 7.30071 7.67814 7.71705 7.88005 7.98748 8.17115 8.24246 8.59547 9.11515 9.70859 11.18497 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028667 B = 0.016929 C = 0.012902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.502737 B = 1653.577450 C = 2169.752866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.120 4.120 4 C 0.044 3.956 5 H 0.033 0.967 6 C -0.488 4.488 7 H 0.057 0.943 8 C 0.059 3.941 9 N -0.893 5.893 10 Si 0.882 3.118 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.088 3.912 15 H 0.054 0.946 16 C -0.146 4.146 17 C -0.157 4.157 18 C 0.052 3.948 19 O -0.361 6.361 20 H 0.039 0.961 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.010 0.990 26 H 0.049 0.951 27 H 0.257 0.743 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 3.333 6.435 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.177 4.177 4 C 0.025 3.975 5 H 0.051 0.949 6 C -0.526 4.526 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.711 3.289 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.200 1.200 14 C 0.031 3.969 15 H 0.072 0.928 16 C -0.183 4.183 17 C -0.194 4.194 18 C -0.025 4.025 19 O -0.280 6.280 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.104 0.896 24 H 0.080 0.920 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.258 3.388 6.118 7.715 hybrid contribution 1.109 -0.240 0.092 1.139 sum -2.148 3.148 6.209 7.286 Atomic orbital electron populations 1.21991 0.99377 0.99623 0.99375 1.21057 0.90838 0.96169 1.02480 1.21701 1.02494 0.96389 0.97136 1.19093 0.95577 0.94026 0.88774 0.94871 1.21030 0.90740 1.30614 1.10244 0.92477 1.24932 0.97699 0.95739 0.95770 1.69908 1.34771 1.34754 1.13807 0.86749 0.86892 0.78196 0.77093 1.21011 1.21465 1.20049 1.22965 0.95434 0.82105 0.96438 0.92806 1.23207 1.02529 0.97969 0.94641 1.23251 1.00530 0.97302 0.98346 1.23207 0.96381 0.97341 0.85574 1.88490 1.68819 1.31286 1.39432 0.94205 0.93966 0.94915 0.89609 0.91991 0.97112 0.93197 0.93301 0.92153 0.89100 0.91248 0.91816 0.92614 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.79 37.16 0.33 -2.64 16 2 C -0.09 -2.06 2.59 -90.62 -0.23 -2.29 16 3 C -0.12 -2.76 7.99 37.16 0.30 -2.47 16 4 C 0.04 1.07 1.51 -91.77 -0.14 0.93 16 5 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.49 -12.90 5.50 -34.44 -0.19 -13.09 16 7 H 0.06 1.51 5.90 -52.49 -0.31 1.20 16 8 C 0.06 1.61 5.33 -17.82 -0.10 1.52 16 9 N -0.89 -25.50 11.69 55.43 0.65 -24.85 16 10 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.09 1.83 2.87 -26.01 -0.07 1.75 16 15 H 0.05 1.08 6.07 -51.93 -0.32 0.77 16 16 C -0.15 -2.68 6.35 -24.63 -0.16 -2.84 16 17 C -0.16 -2.47 7.18 -24.33 -0.17 -2.64 16 18 C 0.05 0.92 7.26 38.19 0.28 1.20 16 19 O -0.36 -7.61 7.20 -35.23 -0.25 -7.87 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.04 0.81 6.23 -51.93 -0.32 0.48 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.09 2.32 6.51 -51.93 -0.34 1.98 16 24 H 0.06 1.55 6.82 -51.93 -0.35 1.20 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.05 1.11 5.99 -51.93 -0.31 0.79 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.85 7.04 -51.93 -0.37 1.49 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -27.92 250.24 -6.22 -34.15 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.20 Total: -1.00 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -0.16 Total: -20.58 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.65 Total: -24.85 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.25 Total: -7.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.92 -6.22 -34.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.651 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds