Wall clock time and date at job start Mon Mar 30 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 C 1.53001 * 109.46971 * 119.99388 * 2 1 3 5 5 H 1.08998 * 109.46762 * 62.62470 * 4 2 1 6 6 C 1.50697 * 109.47209 * 182.62634 * 4 2 1 7 7 H 1.07995 * 120.00407 * 115.02743 * 6 4 2 8 8 C 1.37884 * 119.99891 * 295.03272 * 6 4 2 9 9 N 1.31514 * 119.99925 * 0.66816 * 8 6 4 10 10 Si 1.86799 * 119.99933 * 180.67729 * 8 6 4 11 11 H 1.48494 * 109.47239 * 89.99575 * 10 8 6 12 12 H 1.48495 * 109.46797 * 209.99771 * 10 8 6 13 13 H 1.48494 * 109.47239 * 329.99340 * 10 8 6 14 14 C 1.52998 * 109.47179 * 302.62807 * 4 2 1 15 15 H 1.08995 * 109.82531 * 53.93793 * 14 4 2 16 16 C 1.54387 * 109.83078 * 174.91868 * 14 4 2 17 17 C 1.55574 * 102.27396 * 140.86694 * 16 14 4 18 18 C 1.54949 * 100.82433 * 325.88509 * 17 16 14 19 19 O 1.43240 * 109.83122 * 293.05274 * 14 4 2 20 20 H 1.09003 * 109.46917 * 179.64797 * 1 2 3 21 21 H 1.08996 * 109.47438 * 299.65285 * 1 2 3 22 22 H 1.09004 * 109.46737 * 59.65875 * 1 2 3 23 23 H 1.08992 * 109.47265 * 239.99927 * 2 1 3 24 24 H 1.08994 * 109.46913 * 170.78848 * 3 2 1 25 25 H 1.09003 * 109.46822 * 290.78075 * 3 2 1 26 26 H 1.08995 * 109.47713 * 50.78436 * 3 2 1 27 27 H 0.96997 * 119.99906 * 179.97438 * 9 8 6 28 28 H 1.08992 * 110.84660 * 259.05842 * 16 14 4 29 29 H 1.09000 * 110.84427 * 22.48085 * 16 14 4 30 30 H 1.08999 * 111.22065 * 207.98536 * 17 16 14 31 31 H 1.08996 * 111.12864 * 83.74560 * 17 16 14 32 32 H 1.09003 * 110.30615 * 277.47311 * 18 17 16 33 33 H 1.08995 * 110.30511 * 155.40800 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7155 -1.7614 1.2262 6 6 3.5455 -0.6650 1.2824 7 1 4.0486 -0.1212 2.0682 8 6 4.2809 -1.3079 0.3092 9 7 3.6682 -1.9590 -0.6553 10 14 6.1474 -1.2542 0.3608 11 1 6.6540 -2.4039 1.1524 12 1 6.6831 -1.3310 -1.0221 13 1 6.5888 0.0149 0.9928 14 6 1.4767 -0.0390 2.4976 15 1 0.3905 0.0194 2.4287 16 6 1.8815 -0.8348 3.7571 17 6 2.1951 0.2973 4.7771 18 6 2.7847 1.3798 3.8381 19 8 2.0270 1.2776 2.6221 20 1 -0.3633 -1.0277 -0.0063 21 1 -0.3634 0.5084 0.8930 22 1 -0.3633 0.5192 -0.8870 23 1 1.8934 -0.5138 -0.8899 24 1 3.1174 1.4470 0.1645 25 1 1.8172 1.9066 -0.9608 26 1 1.5485 2.0017 0.7961 27 1 4.1855 -2.4110 -1.3401 28 1 1.0554 -1.4538 4.1069 29 1 2.7653 -1.4429 3.5643 30 1 2.9306 -0.0273 5.5131 31 1 1.2859 0.6515 5.2628 32 1 3.8388 1.1797 3.6452 33 1 2.6625 2.3694 4.2781 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213910673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:13 Heat of formation + Delta-G solvation = -80.536184 kcal Electronic energy + Delta-G solvation = -13849.401973 eV Core-core repulsion = 11680.841604 eV Total energy + Delta-G solvation = -2168.560369 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.45789 -36.94734 -33.98306 -32.76273 -30.69383 -28.31516 -27.41934 -24.92622 -22.60187 -22.09243 -20.05649 -18.40561 -17.14555 -16.70747 -16.33352 -15.17777 -14.96268 -14.63182 -14.43448 -13.99565 -13.69054 -13.24169 -12.85546 -12.77830 -12.60990 -12.23865 -12.17918 -12.01869 -11.75710 -11.67443 -11.45749 -11.28769 -10.81624 -10.55880 -10.31485 -9.76978 -7.99220 -6.03972 1.39136 1.41889 1.49864 2.48221 3.24894 3.35304 3.89091 4.17972 4.25895 4.45258 4.58769 4.65534 4.67005 4.76067 4.96368 4.98889 5.02872 5.08984 5.15026 5.23836 5.30742 5.31474 5.43991 5.54340 5.70652 5.81046 5.95305 6.01792 6.23934 6.48055 6.64888 7.04637 7.58588 9.07530 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.028667 B = 0.016929 C = 0.012902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.502737 B = 1653.577450 C = 2169.752866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.107 4.107 4 C 0.041 3.959 5 H 0.002 0.998 6 C -0.485 4.485 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.923 5.923 10 Si 0.936 3.064 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.272 1.272 14 C 0.089 3.911 15 H 0.067 0.933 16 C -0.148 4.148 17 C -0.141 4.141 18 C 0.042 3.958 19 O -0.380 6.380 20 H 0.039 0.961 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.061 0.939 27 H 0.254 0.746 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 4.331 8.006 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.109 4.109 3 C -0.164 4.164 4 C 0.023 3.977 5 H 0.020 0.980 6 C -0.523 4.523 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.763 3.237 11 H -0.204 1.204 12 H -0.217 1.217 13 H -0.197 1.197 14 C 0.032 3.968 15 H 0.085 0.915 16 C -0.185 4.185 17 C -0.179 4.179 18 C -0.034 4.034 19 O -0.300 6.300 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.055 0.945 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.835 4.393 7.706 9.663 hybrid contribution 1.288 -0.534 -0.385 1.446 sum -2.547 3.859 7.321 8.659 Atomic orbital electron populations 1.21860 0.96447 1.00192 1.00891 1.20977 0.93426 0.96012 1.00484 1.21543 1.00522 0.96129 0.98209 1.19042 0.94609 0.92865 0.91222 0.98033 1.21274 0.92174 1.29422 1.09443 0.92876 1.25596 1.01397 0.96007 0.95824 1.70045 1.35900 1.35936 1.14509 0.85889 0.82636 0.78313 0.76836 1.20381 1.21710 1.19654 1.22829 0.95803 0.82407 0.95725 0.91505 1.23156 1.02130 0.98617 0.94622 1.23216 1.02035 0.95019 0.97581 1.23411 0.95126 0.99785 0.85110 1.88437 1.69156 1.30961 1.41411 0.94166 0.92378 0.93375 0.93459 0.94871 0.95879 0.92045 0.93674 0.89969 0.91872 0.89301 0.89260 0.94540 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.79 71.98 0.63 -4.72 16 2 C -0.09 -4.29 2.59 -10.79 -0.03 -4.32 16 3 C -0.11 -4.86 7.99 71.98 0.58 -4.29 16 4 C 0.04 2.02 1.51 -11.54 -0.02 2.01 16 5 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 6 C -0.48 -26.01 5.50 25.60 0.14 -25.87 16 7 H 0.05 2.84 5.90 -2.91 -0.02 2.82 16 8 C 0.01 0.49 5.33 84.66 0.45 0.94 16 9 N -0.92 -54.24 11.69 21.45 0.25 -53.99 16 10 Si 0.94 44.55 29.54 68.60 2.03 46.57 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 14 C 0.09 3.61 2.87 31.06 0.09 3.70 16 15 H 0.07 2.53 6.07 -2.39 -0.01 2.51 16 16 C -0.15 -5.16 6.35 31.95 0.20 -4.95 16 17 C -0.14 -3.95 7.18 32.15 0.23 -3.72 16 18 C 0.04 1.39 7.26 72.65 0.53 1.92 16 19 O -0.38 -15.33 7.20 -148.98 -1.07 -16.40 16 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.06 2.08 6.23 -2.39 -0.01 2.06 16 22 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.05 2.62 6.51 -2.39 -0.02 2.60 16 24 H 0.03 1.66 6.82 -2.39 -0.02 1.64 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 2.63 5.99 -2.39 -0.01 2.62 16 27 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.06 2.55 7.04 -2.39 -0.02 2.53 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.33 7.13 -2.39 -0.02 1.32 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -60.29 250.24 5.08 -55.21 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.07 Total: 7.92 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 2.80 Total: -39.31 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.25 Total: -53.99 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.07 Total: -16.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -60.29 5.08 -55.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.324 kcal (2) G-P(sol) polarization free energy of solvation -60.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds