Wall clock time and date at job start Mon Mar 30 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 C 1.52999 * 109.47101 * 120.00150 * 2 1 3 5 5 H 1.09004 * 109.47048 * 55.53597 * 4 2 1 6 6 C 1.50698 * 109.47287 * 295.52817 * 4 2 1 7 7 H 1.07990 * 120.00272 * 304.60103 * 6 4 2 8 8 C 1.37884 * 119.99558 * 124.59533 * 6 4 2 9 9 N 1.31512 * 120.00017 * 6.73400 * 8 6 4 10 10 Si 1.86801 * 119.99753 * 186.73127 * 8 6 4 11 11 H 1.48501 * 109.46714 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.46958 * 60.00467 * 10 8 6 13 13 H 1.48496 * 109.47198 * 300.00293 * 10 8 6 14 14 C 1.53008 * 109.47065 * 175.52816 * 4 2 1 15 15 H 1.08998 * 109.86702 * 64.88034 * 14 4 2 16 16 C 1.54103 * 109.87703 * 185.88601 * 14 4 2 17 17 C 1.54815 * 104.18274 * 121.45930 * 16 14 4 18 18 C 1.54991 * 102.09517 * 20.87710 * 17 16 14 19 19 O 1.43737 * 109.88006 * 303.72050 * 14 4 2 20 20 H 1.08994 * 109.47277 * 305.13005 * 1 2 3 21 21 H 1.09005 * 109.46910 * 65.12734 * 1 2 3 22 22 H 1.08998 * 109.46878 * 185.12569 * 1 2 3 23 23 H 1.09009 * 109.47304 * 240.00308 * 2 1 3 24 24 H 1.08998 * 109.46909 * 183.96566 * 3 2 1 25 25 H 1.08994 * 109.47047 * 303.97083 * 3 2 1 26 26 H 1.09004 * 109.46827 * 63.97115 * 3 2 1 27 27 H 0.97000 * 120.00336 * 355.14089 * 9 8 6 28 28 H 1.09002 * 110.48223 * 240.12924 * 16 14 4 29 29 H 1.08990 * 110.48710 * 2.78307 * 16 14 4 30 30 H 1.08998 * 110.90220 * 139.08128 * 17 16 14 31 31 H 1.08997 * 110.90252 * 262.67947 * 17 16 14 32 32 H 1.09006 * 110.61901 * 81.47971 * 18 17 16 33 33 H 1.08999 * 110.62005 * 204.47567 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6128 -1.7233 1.2901 6 6 1.6302 0.0501 2.4772 7 1 1.8994 1.0913 2.5757 8 6 0.9113 -0.5735 3.4750 9 7 0.6972 -1.8699 3.4192 10 14 0.2416 0.4231 4.9060 11 1 -0.4884 -0.4753 5.8361 12 1 -0.6849 1.4642 4.3934 13 1 1.3662 1.0725 5.6262 14 6 3.5659 -0.8194 1.1942 15 1 4.0031 0.1780 1.2403 16 6 4.0789 -1.6714 2.3714 17 6 4.8479 -2.8314 1.6933 18 6 5.1545 -2.2428 0.2927 19 8 3.9700 -1.4779 -0.0179 20 1 -0.3633 0.5913 0.8404 21 1 -0.3633 0.4323 -0.9324 22 1 -0.3633 -1.0236 0.0918 23 1 1.8934 -0.5138 -0.8901 24 1 3.1277 1.4433 -0.0711 25 1 1.6198 1.9765 -0.8522 26 1 1.7359 1.9354 0.9235 27 1 0.9832 -2.3757 2.6426 28 1 4.7488 -1.0867 3.0019 29 1 3.2436 -2.0574 2.9555 30 1 5.7690 -3.0546 2.2317 31 1 4.2208 -3.7193 1.6133 32 1 6.0304 -1.5952 0.3318 33 1 5.2981 -3.0407 -0.4359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213910738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:15 Heat of formation + Delta-G solvation = -71.951111 kcal Electronic energy + Delta-G solvation = -13680.151677 eV Core-core repulsion = 11511.963585 eV Total energy + Delta-G solvation = -2168.188092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.82375 -35.66220 -32.36384 -31.14359 -29.15652 -26.14957 -25.49598 -23.34400 -21.56996 -20.03752 -18.99443 -16.36813 -15.53165 -14.97054 -14.73345 -13.82590 -13.62435 -13.00222 -12.86497 -12.54321 -11.87832 -11.61040 -11.11564 -10.98786 -10.88645 -10.76655 -10.57314 -10.29578 -10.10953 -10.08213 -9.85491 -9.55172 -9.12004 -8.64361 -8.41261 -8.20984 -6.32294 -4.01487 3.43055 3.44674 3.62890 4.50300 4.70708 5.33816 5.43557 5.47503 5.62770 5.87170 5.94039 6.12408 6.14997 6.20951 6.25395 6.39565 6.51587 6.55311 6.69958 6.77737 6.85990 6.89466 7.03938 7.19443 7.27938 7.41405 7.53359 7.55137 7.82597 8.34186 8.46683 8.92784 9.68795 11.04958 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.015215 C = 0.011705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.703096 B = 1839.816430 C = 2391.634423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.134 4.134 4 C 0.036 3.964 5 H 0.047 0.953 6 C -0.580 4.580 7 H 0.052 0.948 8 C 0.025 3.975 9 N -0.913 5.913 10 Si 1.061 2.939 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.289 1.289 14 C 0.084 3.916 15 H 0.049 0.951 16 C -0.139 4.139 17 C -0.157 4.157 18 C 0.046 3.954 19 O -0.384 6.384 20 H 0.060 0.940 21 H 0.026 0.974 22 H 0.040 0.960 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.271 0.729 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 1.032 -3.342 6.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.101 4.101 3 C -0.191 4.191 4 C 0.017 3.983 5 H 0.065 0.935 6 C -0.618 4.618 7 H 0.070 0.930 8 C -0.179 4.179 9 N -0.551 5.551 10 Si 0.889 3.111 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.216 1.216 14 C 0.027 3.973 15 H 0.067 0.933 16 C -0.176 4.176 17 C -0.195 4.195 18 C -0.031 4.031 19 O -0.304 6.304 20 H 0.079 0.921 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.197 0.919 -2.093 4.779 hybrid contribution 1.072 0.162 -1.199 1.617 sum 5.268 1.081 -3.293 6.306 Atomic orbital electron populations 1.21623 0.96552 1.00719 0.99449 1.21057 0.94746 0.95600 0.98669 1.21774 0.99376 0.97453 1.00475 1.19177 0.88241 0.97382 0.93546 0.93484 1.21767 1.37522 0.98107 1.04412 0.93009 1.25723 0.94619 0.96719 1.00828 1.70846 1.46985 1.06290 1.30935 0.83658 0.76521 0.75045 0.75827 1.20943 1.21446 1.21596 1.23275 0.99181 0.93490 0.81330 0.93264 1.22853 1.00380 0.95603 0.98791 1.23139 1.00144 0.99631 0.96607 1.23377 0.89426 0.94370 0.95970 1.88864 1.42543 1.64949 1.34065 0.92057 0.95520 0.94130 0.93832 0.94254 0.95380 0.91822 0.91612 0.92530 0.88698 0.91612 0.91217 0.93521 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.91 37.16 0.33 -2.39 16 2 C -0.08 -1.83 2.59 -90.62 -0.23 -2.07 16 3 C -0.13 -2.74 8.60 37.16 0.32 -2.42 16 4 C 0.04 0.87 1.44 -91.77 -0.13 0.74 16 5 H 0.05 1.27 5.72 -51.93 -0.30 0.98 16 6 C -0.58 -15.10 5.95 -34.44 -0.21 -15.30 16 7 H 0.05 1.36 6.39 -52.49 -0.34 1.03 16 8 C 0.03 0.69 5.22 -17.82 -0.09 0.59 16 9 N -0.91 -26.13 13.10 55.43 0.73 -25.40 16 10 Si 1.06 24.40 29.91 -169.99 -5.08 19.31 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.08 1.88 2.57 -26.15 -0.07 1.82 16 15 H 0.05 1.12 6.91 -51.93 -0.36 0.76 16 16 C -0.14 -2.93 6.25 -25.20 -0.16 -3.08 16 17 C -0.16 -2.75 7.15 -24.72 -0.18 -2.93 16 18 C 0.05 0.78 7.72 38.21 0.29 1.08 16 19 O -0.38 -8.22 10.30 -35.23 -0.36 -8.59 16 20 H 0.06 1.40 7.53 -51.93 -0.39 1.00 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.98 7.46 -51.92 -0.39 0.59 16 24 H 0.04 0.79 6.87 -51.93 -0.36 0.43 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 1.36 6.20 -51.93 -0.32 1.04 16 27 H 0.27 7.79 6.02 -40.82 -0.25 7.54 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.09 2.30 6.39 -51.93 -0.33 1.97 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 255.68 15.07 3.85 3.85 Total: -1.00 -27.77 255.68 -6.19 -33.97 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.20 Total: 0.82 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -0.12 Total: -23.97 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.73 Total: -25.40 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.36 Total: -8.59 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.77 -6.19 -33.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.985 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds