Wall clock time and date at job start Mon Mar 30 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 C 1.52999 * 109.47101 * 120.00150 * 2 1 3 5 5 H 1.09004 * 109.47048 * 55.53597 * 4 2 1 6 6 C 1.50698 * 109.47287 * 295.52817 * 4 2 1 7 7 H 1.07990 * 120.00272 * 304.60103 * 6 4 2 8 8 C 1.37884 * 119.99558 * 124.59533 * 6 4 2 9 9 N 1.31512 * 120.00017 * 6.73400 * 8 6 4 10 10 Si 1.86801 * 119.99753 * 186.73127 * 8 6 4 11 11 H 1.48501 * 109.46714 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.46958 * 60.00467 * 10 8 6 13 13 H 1.48496 * 109.47198 * 300.00293 * 10 8 6 14 14 C 1.53008 * 109.47065 * 175.52816 * 4 2 1 15 15 H 1.08998 * 109.86702 * 64.88034 * 14 4 2 16 16 C 1.54103 * 109.87703 * 185.88601 * 14 4 2 17 17 C 1.54815 * 104.18274 * 121.45930 * 16 14 4 18 18 C 1.54991 * 102.09517 * 20.87710 * 17 16 14 19 19 O 1.43737 * 109.88006 * 303.72050 * 14 4 2 20 20 H 1.08994 * 109.47277 * 305.13005 * 1 2 3 21 21 H 1.09005 * 109.46910 * 65.12734 * 1 2 3 22 22 H 1.08998 * 109.46878 * 185.12569 * 1 2 3 23 23 H 1.09009 * 109.47304 * 240.00308 * 2 1 3 24 24 H 1.08998 * 109.46909 * 183.96566 * 3 2 1 25 25 H 1.08994 * 109.47047 * 303.97083 * 3 2 1 26 26 H 1.09004 * 109.46827 * 63.97115 * 3 2 1 27 27 H 0.97000 * 120.00336 * 355.14089 * 9 8 6 28 28 H 1.09002 * 110.48223 * 240.12924 * 16 14 4 29 29 H 1.08990 * 110.48710 * 2.78307 * 16 14 4 30 30 H 1.08998 * 110.90220 * 139.08128 * 17 16 14 31 31 H 1.08997 * 110.90252 * 262.67947 * 17 16 14 32 32 H 1.09006 * 110.61901 * 81.47971 * 18 17 16 33 33 H 1.08999 * 110.62005 * 204.47567 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6128 -1.7233 1.2901 6 6 1.6302 0.0501 2.4772 7 1 1.8994 1.0913 2.5757 8 6 0.9113 -0.5735 3.4750 9 7 0.6972 -1.8699 3.4192 10 14 0.2416 0.4231 4.9060 11 1 -0.4884 -0.4753 5.8361 12 1 -0.6849 1.4642 4.3934 13 1 1.3662 1.0725 5.6262 14 6 3.5659 -0.8194 1.1942 15 1 4.0031 0.1780 1.2403 16 6 4.0789 -1.6714 2.3714 17 6 4.8479 -2.8314 1.6933 18 6 5.1545 -2.2428 0.2927 19 8 3.9700 -1.4779 -0.0179 20 1 -0.3633 0.5913 0.8404 21 1 -0.3633 0.4323 -0.9324 22 1 -0.3633 -1.0236 0.0918 23 1 1.8934 -0.5138 -0.8901 24 1 3.1277 1.4433 -0.0711 25 1 1.6198 1.9765 -0.8522 26 1 1.7359 1.9354 0.9235 27 1 0.9832 -2.3757 2.6426 28 1 4.7488 -1.0867 3.0019 29 1 3.2436 -2.0574 2.9555 30 1 5.7690 -3.0546 2.2317 31 1 4.2208 -3.7193 1.6133 32 1 6.0304 -1.5952 0.3318 33 1 5.2981 -3.0407 -0.4359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213910738.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:14 Heat of formation + Delta-G solvation = -87.686478 kcal Electronic energy + Delta-G solvation = -13680.834013 eV Core-core repulsion = 11511.963585 eV Total energy + Delta-G solvation = -2168.870429 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48328 -37.45404 -34.31433 -32.77508 -30.84886 -27.85706 -27.33848 -25.26689 -23.08822 -21.73406 -20.85690 -18.26747 -17.17688 -16.58995 -16.48094 -15.66119 -15.36573 -14.72358 -14.44373 -14.27241 -13.70938 -13.42138 -12.78410 -12.69597 -12.58481 -12.43764 -12.09420 -12.02548 -11.91526 -11.76210 -11.68871 -11.20977 -10.93921 -10.49554 -10.34941 -10.16381 -8.45721 -6.13915 1.56538 1.62485 1.80691 2.61438 3.10192 3.41200 3.87701 3.99389 4.15050 4.20810 4.34840 4.40953 4.49881 4.61031 4.83121 4.87068 4.90748 4.92705 5.02142 5.11207 5.12806 5.15618 5.24990 5.40812 5.51050 5.60683 5.64543 5.76330 6.12568 6.34511 6.36667 6.81107 7.62893 8.91718 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.015215 C = 0.011705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.703096 B = 1839.816430 C = 2391.634423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.125 4.125 4 C 0.033 3.967 5 H 0.012 0.988 6 C -0.574 4.574 7 H 0.049 0.951 8 C -0.020 4.020 9 N -0.940 5.940 10 Si 1.100 2.900 11 H -0.291 1.291 12 H -0.274 1.274 13 H -0.274 1.274 14 C 0.090 3.910 15 H 0.046 0.954 16 C -0.142 4.142 17 C -0.149 4.149 18 C 0.042 3.958 19 O -0.404 6.404 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.023 0.977 23 H 0.042 0.958 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.257 0.743 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 1.904 -3.904 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.103 4.103 3 C -0.182 4.182 4 C 0.014 3.986 5 H 0.030 0.970 6 C -0.612 4.612 7 H 0.067 0.933 8 C -0.219 4.219 9 N -0.579 5.579 10 Si 0.924 3.076 11 H -0.217 1.217 12 H -0.200 1.200 13 H -0.199 1.199 14 C 0.033 3.967 15 H 0.064 0.936 16 C -0.180 4.180 17 C -0.187 4.187 18 C -0.034 4.034 19 O -0.324 6.324 20 H 0.063 0.937 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.322 1.801 -2.674 6.222 hybrid contribution 0.774 -0.134 -1.097 1.349 sum 6.096 1.667 -3.771 7.359 Atomic orbital electron populations 1.21553 0.96147 0.99634 1.00367 1.21049 0.95155 0.96675 0.97433 1.21665 0.99570 0.95998 1.00950 1.19130 0.89888 0.95497 0.94073 0.96952 1.21923 1.36638 0.97860 1.04751 0.93280 1.26860 0.94931 0.96800 1.03265 1.70944 1.48857 1.07285 1.30843 0.83133 0.76672 0.74185 0.73569 1.21726 1.19952 1.19908 1.22992 0.97572 0.93767 0.82398 0.93570 1.22797 0.99777 0.97063 0.98398 1.23112 1.00841 0.97788 0.96924 1.23673 0.88494 0.95029 0.96223 1.88817 1.44564 1.65483 1.33519 0.93678 0.92384 0.95779 0.93932 0.94023 0.92772 0.93078 0.93024 0.91599 0.92357 0.88343 0.92005 0.91327 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.91 71.98 0.64 -4.46 16 2 C -0.08 -3.72 2.59 -10.79 -0.03 -3.75 16 3 C -0.12 -4.90 8.60 71.98 0.62 -4.28 16 4 C 0.03 1.65 1.44 -11.54 -0.02 1.63 16 5 H 0.01 0.69 5.72 -2.39 -0.01 0.68 16 6 C -0.57 -30.12 5.95 25.60 0.15 -29.97 16 7 H 0.05 2.57 6.39 -2.92 -0.02 2.55 16 8 C -0.02 -1.09 5.22 84.66 0.44 -0.65 16 9 N -0.94 -55.43 13.10 21.45 0.28 -55.14 16 10 Si 1.10 49.17 29.91 68.60 2.05 51.22 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.09 3.99 2.57 30.97 0.08 4.07 16 15 H 0.05 2.06 6.91 -2.39 -0.02 2.05 16 16 C -0.14 -5.98 6.25 31.59 0.20 -5.78 16 17 C -0.15 -4.93 7.15 31.89 0.23 -4.70 16 18 C 0.04 1.32 7.72 72.66 0.56 1.88 16 19 O -0.40 -16.73 10.30 -148.98 -1.54 -18.26 16 20 H 0.04 2.03 7.53 -2.39 -0.02 2.02 16 21 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.04 1.88 7.46 -2.38 -0.02 1.86 16 24 H 0.04 1.59 6.87 -2.39 -0.02 1.57 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 2.12 6.20 -2.38 -0.01 2.10 16 27 H 0.26 15.54 6.02 -92.71 -0.56 14.98 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.06 2.89 6.39 -2.39 -0.02 2.88 16 30 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 33 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -59.90 255.68 4.95 -54.95 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 1.28 Total: 13.24 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 2.88 Total: -46.01 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.28 Total: -55.14 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.54 Total: -18.26 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.05 Total: 51.22 kcal Total: -59.90 4.95 -54.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910738.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.738 kcal (2) G-P(sol) polarization free energy of solvation -59.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds