Wall clock time and date at job start Mon Mar 30 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47398 * 2 1 4 4 C 1.50702 * 109.46742 * 239.99793 * 2 1 3 5 5 H 1.08003 * 119.99764 * 241.25307 * 4 2 1 6 6 C 1.37876 * 120.00177 * 61.26248 * 4 2 1 7 7 N 1.31508 * 119.99897 * 194.08918 * 6 4 2 8 8 Si 1.86802 * 119.99922 * 14.08404 * 6 4 2 9 9 H 1.48499 * 109.47157 * 84.53708 * 8 6 4 10 10 H 1.48501 * 109.47312 * 204.53923 * 8 6 4 11 11 H 1.48506 * 109.47198 * 324.53987 * 8 6 4 12 12 C 1.53006 * 109.46937 * 120.00244 * 2 1 3 13 13 H 1.08998 * 109.48823 * 60.02453 * 12 2 1 14 14 C 1.53089 * 109.47774 * 299.99490 * 12 2 1 15 15 C 1.53181 * 109.16046 * 182.41074 * 14 12 2 16 16 C 1.53174 * 109.10971 * 56.93611 * 15 14 12 17 17 C 1.53100 * 109.15801 * 303.15286 * 16 15 14 18 18 O 1.42904 * 109.47657 * 180.02562 * 12 2 1 19 19 H 1.09003 * 109.46916 * 309.52562 * 1 2 3 20 20 H 1.09000 * 109.47136 * 69.52371 * 1 2 3 21 21 H 1.09001 * 109.47581 * 189.52168 * 1 2 3 22 22 H 1.08998 * 109.47262 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46895 * 299.99745 * 3 2 1 24 24 H 1.08995 * 109.46736 * 60.00219 * 3 2 1 25 25 H 0.97000 * 119.99974 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.52156 * 62.50815 * 14 12 2 27 27 H 1.08995 * 109.57870 * 302.34887 * 14 12 2 28 28 H 1.08997 * 109.54324 * 176.84974 * 15 14 12 29 29 H 1.09006 * 109.54159 * 297.02028 * 15 14 12 30 30 H 1.09002 * 109.51902 * 62.97292 * 16 15 14 31 31 H 1.09000 * 109.52055 * 183.15704 * 16 15 14 32 32 H 1.08998 * 109.40652 * 297.49299 * 17 16 15 33 33 H 1.09002 * 109.48260 * 177.50242 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6363 -1.6003 -1.1315 6 6 1.7208 -0.2245 -2.4826 7 7 1.9122 -0.9749 -3.5455 8 14 1.0266 1.4997 -2.6692 9 1 2.1412 2.4801 -2.7113 10 1 0.2445 1.5849 -3.9286 11 1 0.1424 1.8049 -1.5157 12 6 2.0400 -0.7213 1.2493 13 1 1.6772 -1.7492 1.2493 14 6 1.5299 0.0002 2.4994 15 6 2.0935 -0.6916 3.7444 16 6 3.6230 -0.7024 3.6629 17 6 4.0523 -1.3949 2.3667 18 8 3.4690 -0.7209 1.2497 19 1 -0.3633 0.6541 0.7927 20 1 -0.3633 0.3595 -0.9627 21 1 -0.3634 -1.0135 0.1700 22 1 3.1300 1.4424 -0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.6927 -0.6331 -4.4264 26 1 0.4407 -0.0380 2.5230 27 1 1.8575 1.0396 2.4804 28 1 1.7797 -0.1494 4.6363 29 1 1.7235 -1.7159 3.7913 30 1 3.9952 0.3221 3.6677 31 1 4.0295 -1.2425 4.5180 32 1 3.7158 -2.4316 2.3814 33 1 5.1386 -1.3663 2.2818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213910816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:30 Heat of formation + Delta-G solvation = -45.635617 kcal Electronic energy + Delta-G solvation = -13763.618479 eV Core-core repulsion = 11596.571512 eV Total energy + Delta-G solvation = -2167.046967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07649 -35.50812 -33.10080 -31.78442 -29.38082 -26.29929 -24.98230 -24.32799 -23.05458 -20.07455 -18.67761 -15.99982 -15.60781 -15.37629 -15.04689 -14.15477 -13.94829 -13.08412 -12.85394 -12.57460 -12.32179 -11.99406 -11.89706 -11.79967 -11.20071 -10.78857 -10.75292 -10.14092 -10.09706 -10.01426 -9.90365 -9.50243 -9.02178 -8.64011 -8.47155 -8.25297 -5.98516 -3.91637 3.35972 3.44136 3.48926 4.50252 4.54524 5.12616 5.16376 5.24147 5.34779 5.51606 5.70579 5.83413 5.92699 6.07350 6.11442 6.18717 6.26133 6.30553 6.41562 6.45914 6.49668 6.59686 6.74149 6.82273 6.89816 7.05435 7.29793 7.57843 7.89119 8.13274 8.66862 9.11003 9.67134 11.15327 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052328 B = 0.012511 C = 0.011470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.962479 B = 2237.544259 C = 2440.467392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 C -0.143 4.143 4 C -0.495 4.495 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.883 3.117 9 H -0.287 1.287 10 H -0.308 1.308 11 H -0.250 1.250 12 C 0.118 3.882 13 H 0.047 0.953 14 C -0.157 4.157 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.057 3.943 18 O -0.357 6.357 19 H 0.027 0.973 20 H 0.058 0.942 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 1.928 12.619 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.043 3.957 3 C -0.200 4.200 4 C -0.532 4.532 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.215 1.215 10 H -0.237 1.237 11 H -0.176 1.176 12 C 0.060 3.940 13 H 0.065 0.935 14 C -0.195 4.195 15 C -0.159 4.159 16 C -0.192 4.192 17 C -0.021 4.021 18 O -0.275 6.275 19 H 0.046 0.954 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.146 1.988 12.273 12.434 hybrid contribution -0.403 0.819 0.025 0.913 sum -0.549 2.807 12.297 12.625 Atomic orbital electron populations 1.22300 0.97615 0.99663 1.00300 1.18483 0.91598 0.92238 0.93357 1.22313 1.01624 0.97947 0.98072 1.20820 1.32483 1.11959 0.87983 0.90641 1.24996 0.95093 0.97135 0.95942 1.69958 1.49289 1.35875 0.98585 0.87344 0.79289 0.86110 0.75669 1.21511 1.23689 1.17607 1.22053 0.80157 0.97759 0.94022 0.93459 1.22402 1.00833 1.00908 0.95342 1.21595 0.95412 1.00663 0.98225 1.22188 0.96593 1.01801 0.98630 1.22453 0.98164 0.95053 0.86394 1.88104 1.20186 1.76389 1.42824 0.95422 0.92373 0.93651 0.92357 0.94677 0.95084 0.92890 0.91240 0.91145 0.92448 0.92315 0.91493 0.91889 0.94077 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.20 37.16 0.27 -2.80 16 2 C 0.04 1.04 0.36 -155.66 -0.06 0.98 16 3 C -0.14 -3.24 7.20 37.16 0.27 -2.97 16 4 C -0.49 -14.11 8.28 -34.44 -0.29 -14.39 16 5 H 0.08 2.38 7.96 -52.48 -0.42 1.96 16 6 C 0.07 2.03 5.32 -17.82 -0.09 1.93 16 7 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 8 Si 0.88 22.38 22.79 -169.99 -3.87 18.50 16 9 H -0.29 -7.30 7.10 56.52 0.40 -6.90 16 10 H -0.31 -7.89 7.11 56.52 0.40 -7.49 16 11 H -0.25 -5.81 4.65 56.52 0.26 -5.55 16 12 C 0.12 2.42 1.84 -26.68 -0.05 2.38 16 13 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.16 -2.62 4.71 -26.59 -0.13 -2.75 16 15 C -0.12 -1.68 6.02 -26.55 -0.16 -1.84 16 16 C -0.15 -2.10 6.14 -26.59 -0.16 -2.26 16 17 C 0.06 0.92 6.84 37.21 0.25 1.17 16 18 O -0.36 -7.56 9.34 -35.23 -0.33 -7.89 16 19 H 0.03 0.51 7.01 -51.93 -0.36 0.15 16 20 H 0.06 1.34 4.30 -51.93 -0.22 1.11 16 21 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 22 H 0.06 1.36 7.68 -51.93 -0.40 0.96 16 23 H 0.03 0.83 2.26 -51.93 -0.12 0.71 16 24 H 0.03 0.60 6.38 -51.93 -0.33 0.27 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.07 1.10 6.80 -51.93 -0.35 0.74 16 27 H 0.07 1.19 6.32 -51.93 -0.33 0.87 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 240.98 15.07 3.63 3.63 Total: -1.00 -30.75 240.98 -5.13 -35.88 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.19 Total: -2.31 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -0.14 Total: -20.55 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.26 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.33 Total: -7.89 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -3.87 Total: 18.50 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.75 -5.13 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.752 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds