Wall clock time and date at job start Mon Mar 30 2020 02:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47398 * 2 1 4 4 C 1.50702 * 109.46742 * 239.99793 * 2 1 3 5 5 H 1.08003 * 119.99764 * 241.25307 * 4 2 1 6 6 C 1.37876 * 120.00177 * 61.26248 * 4 2 1 7 7 N 1.31508 * 119.99897 * 194.08918 * 6 4 2 8 8 Si 1.86802 * 119.99922 * 14.08404 * 6 4 2 9 9 H 1.48499 * 109.47157 * 84.53708 * 8 6 4 10 10 H 1.48501 * 109.47312 * 204.53923 * 8 6 4 11 11 H 1.48506 * 109.47198 * 324.53987 * 8 6 4 12 12 C 1.53006 * 109.46937 * 120.00244 * 2 1 3 13 13 H 1.08998 * 109.48823 * 60.02453 * 12 2 1 14 14 C 1.53089 * 109.47774 * 299.99490 * 12 2 1 15 15 C 1.53181 * 109.16046 * 182.41074 * 14 12 2 16 16 C 1.53174 * 109.10971 * 56.93611 * 15 14 12 17 17 C 1.53100 * 109.15801 * 303.15286 * 16 15 14 18 18 O 1.42904 * 109.47657 * 180.02562 * 12 2 1 19 19 H 1.09003 * 109.46916 * 309.52562 * 1 2 3 20 20 H 1.09000 * 109.47136 * 69.52371 * 1 2 3 21 21 H 1.09001 * 109.47581 * 189.52168 * 1 2 3 22 22 H 1.08998 * 109.47262 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.46895 * 299.99745 * 3 2 1 24 24 H 1.08995 * 109.46736 * 60.00219 * 3 2 1 25 25 H 0.97000 * 119.99974 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.52156 * 62.50815 * 14 12 2 27 27 H 1.08995 * 109.57870 * 302.34887 * 14 12 2 28 28 H 1.08997 * 109.54324 * 176.84974 * 15 14 12 29 29 H 1.09006 * 109.54159 * 297.02028 * 15 14 12 30 30 H 1.09002 * 109.51902 * 62.97292 * 16 15 14 31 31 H 1.09000 * 109.52055 * 183.15704 * 16 15 14 32 32 H 1.08998 * 109.40652 * 297.49299 * 17 16 15 33 33 H 1.09002 * 109.48260 * 177.50242 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6363 -1.6003 -1.1315 6 6 1.7208 -0.2245 -2.4826 7 7 1.9122 -0.9749 -3.5455 8 14 1.0266 1.4997 -2.6692 9 1 2.1412 2.4801 -2.7113 10 1 0.2445 1.5849 -3.9286 11 1 0.1424 1.8049 -1.5157 12 6 2.0400 -0.7213 1.2493 13 1 1.6772 -1.7492 1.2493 14 6 1.5299 0.0002 2.4994 15 6 2.0935 -0.6916 3.7444 16 6 3.6230 -0.7024 3.6629 17 6 4.0523 -1.3949 2.3667 18 8 3.4690 -0.7209 1.2497 19 1 -0.3633 0.6541 0.7927 20 1 -0.3633 0.3595 -0.9627 21 1 -0.3634 -1.0135 0.1700 22 1 3.1300 1.4424 -0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.6927 -0.6331 -4.4264 26 1 0.4407 -0.0380 2.5230 27 1 1.8575 1.0396 2.4804 28 1 1.7797 -0.1494 4.6363 29 1 1.7235 -1.7159 3.7913 30 1 3.9952 0.3221 3.6677 31 1 4.0295 -1.2425 4.5180 32 1 3.7158 -2.4316 2.3814 33 1 5.1386 -1.3663 2.2818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213910816.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:30 Heat of formation + Delta-G solvation = -66.807371 kcal Electronic energy + Delta-G solvation = -13764.536555 eV Core-core repulsion = 11596.571512 eV Total energy + Delta-G solvation = -2167.965043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.55892 -37.24174 -34.42137 -33.89118 -30.82918 -28.04280 -27.04995 -25.76148 -24.48981 -21.45107 -20.35820 -18.09174 -17.38239 -16.90969 -16.59027 -15.37354 -15.33670 -14.83629 -14.71928 -14.30752 -13.86131 -13.69522 -13.58786 -13.28571 -12.72916 -12.34433 -12.04892 -12.01387 -11.78432 -11.68775 -11.40303 -11.09284 -10.89939 -10.55586 -10.35825 -9.99357 -8.25180 -6.22080 1.35564 1.37006 1.49187 2.37222 3.05007 3.20369 3.94832 4.01761 4.08314 4.19637 4.36802 4.37878 4.55380 4.66508 4.70460 4.83779 4.87503 4.93184 4.97450 5.03019 5.10068 5.15448 5.19488 5.26918 5.32857 5.45861 5.56252 5.80251 5.84958 6.39202 6.67502 6.83647 7.40062 8.92877 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.052328 B = 0.012511 C = 0.011470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.962479 B = 2237.544259 C = 2440.467392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.034 3.966 3 C -0.139 4.139 4 C -0.495 4.495 5 H 0.023 0.977 6 C 0.009 3.991 7 N -0.953 5.953 8 Si 0.942 3.058 9 H -0.288 1.288 10 H -0.314 1.314 11 H -0.207 1.207 12 C 0.117 3.883 13 H 0.028 0.972 14 C -0.150 4.150 15 C -0.120 4.120 16 C -0.147 4.147 17 C 0.046 3.954 18 O -0.395 6.395 19 H 0.067 0.933 20 H 0.043 0.957 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.261 0.739 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 3.771 15.453 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 C -0.196 4.196 4 C -0.533 4.533 5 H 0.041 0.959 6 C -0.187 4.187 7 N -0.593 5.593 8 Si 0.772 3.228 9 H -0.215 1.215 10 H -0.243 1.243 11 H -0.131 1.131 12 C 0.060 3.940 13 H 0.046 0.954 14 C -0.188 4.188 15 C -0.157 4.157 16 C -0.184 4.184 17 C -0.031 4.031 18 O -0.315 6.315 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.058 0.942 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.244 3.830 15.151 15.677 hybrid contribution 0.054 0.091 -0.840 0.847 sum -1.190 3.921 14.311 14.886 Atomic orbital electron populations 1.22210 0.95777 1.00798 1.00880 1.18568 0.93058 0.92771 0.92314 1.22226 1.00719 0.97198 0.99423 1.21110 1.31072 1.10542 0.90619 0.95889 1.25867 0.96013 1.01376 0.95463 1.70121 1.51831 1.38157 0.99236 0.86374 0.79237 0.80455 0.76730 1.21547 1.24325 1.13119 1.21931 0.80274 0.96946 0.94851 0.95384 1.22321 1.01598 1.00549 0.94302 1.21616 0.95239 1.01015 0.97828 1.22139 0.96730 1.01852 0.97725 1.22738 0.98652 0.95060 0.86660 1.88032 1.20607 1.77216 1.45603 0.91465 0.93801 0.93556 0.93966 0.95465 0.91243 0.92996 0.89896 0.90899 0.89526 0.91989 0.91385 0.88917 0.94208 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 7.20 71.98 0.52 -5.14 16 2 C 0.03 1.55 0.36 -52.93 -0.02 1.53 16 3 C -0.14 -5.95 7.20 71.98 0.52 -5.43 16 4 C -0.50 -29.17 8.28 25.60 0.21 -28.96 16 5 H 0.02 1.54 7.96 -2.91 -0.02 1.52 16 6 C 0.01 0.51 5.32 84.66 0.45 0.96 16 7 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 8 Si 0.94 46.03 22.79 68.60 1.56 47.60 16 9 H -0.29 -13.97 7.10 99.48 0.71 -13.27 16 10 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 11 H -0.21 -8.72 4.65 99.48 0.46 -8.26 16 12 C 0.12 4.73 1.84 30.63 0.06 4.78 16 13 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 14 C -0.15 -4.46 4.71 30.68 0.14 -4.32 16 15 C -0.12 -2.82 6.02 30.71 0.18 -2.64 16 16 C -0.15 -3.49 6.14 30.69 0.19 -3.30 16 17 C 0.05 1.42 6.84 72.02 0.49 1.92 16 18 O -0.40 -16.77 9.34 -148.98 -1.39 -18.16 16 19 H 0.07 2.20 7.01 -2.39 -0.02 2.18 16 20 H 0.04 1.88 4.30 -2.39 -0.01 1.87 16 21 H 0.05 1.83 8.12 -2.39 -0.02 1.81 16 22 H 0.04 1.90 7.68 -2.39 -0.02 1.88 16 23 H 0.03 1.20 2.26 -2.38 -0.01 1.19 16 24 H 0.07 2.42 6.38 -2.39 -0.02 2.40 16 25 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 26 H 0.08 2.23 6.80 -2.38 -0.02 2.21 16 27 H 0.07 2.14 6.32 -2.39 -0.02 2.12 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -69.49 240.98 4.05 -65.44 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.83 Total: 7.39 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 2.75 Total: -40.60 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.30 Total: -61.67 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -1.39 Total: -18.16 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.56 Total: 47.60 kcal Total: -69.49 4.05 -65.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910816.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.365 kcal (2) G-P(sol) polarization free energy of solvation -69.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds