Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46995 * 2 1 4 4 C 1.50705 * 109.47125 * 240.00339 * 2 1 3 5 5 H 1.07993 * 119.99733 * 241.20233 * 4 2 1 6 6 C 1.37878 * 119.99933 * 61.19995 * 4 2 1 7 7 N 1.31510 * 119.99999 * 194.16326 * 6 4 2 8 8 Si 1.86803 * 120.00206 * 14.17229 * 6 4 2 9 9 H 1.48491 * 109.47151 * 84.52446 * 8 6 4 10 10 H 1.48497 * 109.47116 * 204.52822 * 8 6 4 11 11 H 1.48505 * 109.46659 * 324.52614 * 8 6 4 12 12 C 1.52996 * 109.47376 * 119.99908 * 2 1 3 13 13 H 1.09001 * 109.48382 * 180.02562 * 12 2 1 14 14 C 1.53091 * 109.47983 * 300.06086 * 12 2 1 15 15 C 1.53179 * 109.16054 * 177.58659 * 14 12 2 16 16 C 1.53180 * 109.03876 * 303.02004 * 15 14 12 17 17 C 1.53088 * 109.16330 * 56.97880 * 16 15 14 18 18 O 1.42904 * 109.47562 * 60.00080 * 12 2 1 19 19 H 1.09007 * 109.47404 * 69.53106 * 1 2 3 20 20 H 1.09004 * 109.47229 * 309.53384 * 1 2 3 21 21 H 1.08992 * 109.47264 * 189.53238 * 1 2 3 22 22 H 1.08996 * 109.46992 * 60.00429 * 3 2 1 23 23 H 1.09004 * 109.46761 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47521 * 300.00103 * 3 2 1 25 25 H 0.96993 * 120.00416 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.52096 * 297.49226 * 14 12 2 27 27 H 1.08998 * 109.52479 * 57.68590 * 14 12 2 28 28 H 1.09001 * 109.54172 * 183.14647 * 15 14 12 29 29 H 1.09002 * 109.54324 * 62.88956 * 15 14 12 30 30 H 1.08999 * 109.52220 * 297.07063 * 16 15 14 31 31 H 1.09004 * 109.57316 * 176.91730 * 16 15 14 32 32 H 1.09000 * 109.48104 * 182.40646 * 17 16 15 33 33 H 1.09009 * 109.48940 * 62.38159 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6371 -1.5996 -1.1316 6 6 1.7198 -0.2250 -2.4826 7 7 1.9100 -0.9759 -3.5453 8 14 1.0263 1.4995 -2.6696 9 1 2.1412 2.4793 -2.7132 10 1 0.2431 1.5843 -3.9284 11 1 0.1431 1.8055 -1.5156 12 6 2.0400 -0.7212 1.2492 13 1 3.1300 -0.7209 1.2496 14 6 1.5286 -0.0006 2.4993 15 6 1.9930 -0.7627 3.7443 16 6 1.4927 -2.2080 3.6609 17 6 2.0054 -2.8434 2.3659 18 8 1.5638 -2.0685 1.2493 19 1 -0.3634 0.3594 -0.9628 20 1 -0.3634 0.6542 0.7926 21 1 -0.3633 -1.0134 0.1702 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9565 -0.8900 25 1 1.6905 -0.6344 -4.4262 26 1 1.9268 1.0138 2.5235 27 1 0.4394 0.0351 2.4793 28 1 1.5856 -0.2866 4.6362 29 1 3.0820 -0.7558 3.7909 30 1 0.4027 -2.2170 3.6644 31 1 1.8643 -2.7730 4.5159 32 1 1.6172 -3.8583 2.2804 33 1 3.0950 -2.8710 2.3810 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213910874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = -45.479118 kcal Electronic energy + Delta-G solvation = -13760.304741 eV Core-core repulsion = 11593.264561 eV Total energy + Delta-G solvation = -2167.040180 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.07153 -35.50766 -33.09294 -31.78368 -29.37981 -26.25434 -24.97856 -24.36523 -23.03317 -20.08778 -18.65478 -15.99779 -15.63080 -15.43447 -14.90088 -14.15998 -13.95895 -13.15353 -12.91460 -12.50529 -12.32252 -11.96692 -11.92561 -11.74274 -11.20864 -10.81844 -10.73912 -10.16108 -10.07399 -10.01054 -9.85475 -9.50365 -9.05292 -8.59814 -8.49324 -8.24716 -5.98210 -3.91409 3.34399 3.41968 3.48011 4.49666 4.54193 5.13233 5.17063 5.24108 5.35931 5.52034 5.70731 5.84714 5.92559 6.07871 6.11563 6.16609 6.26578 6.31530 6.39219 6.43919 6.50033 6.63260 6.72386 6.79157 6.90110 7.10700 7.30275 7.63759 7.89443 8.14913 8.67080 9.11681 9.67127 11.15702 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053454 B = 0.012599 C = 0.011166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.687309 B = 2221.855591 C = 2506.985067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.045 3.955 3 C -0.149 4.149 4 C -0.496 4.496 5 H 0.075 0.925 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.879 3.121 9 H -0.288 1.288 10 H -0.306 1.306 11 H -0.248 1.248 12 C 0.118 3.882 13 H 0.046 0.954 14 C -0.157 4.157 15 C -0.121 4.121 16 C -0.154 4.154 17 C 0.057 3.943 18 O -0.355 6.355 19 H 0.049 0.951 20 H 0.021 0.979 21 H 0.053 0.947 22 H 0.035 0.965 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.261 0.739 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 1.537 12.612 12.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.044 3.956 3 C -0.206 4.206 4 C -0.533 4.533 5 H 0.093 0.907 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.712 3.288 9 H -0.216 1.216 10 H -0.235 1.235 11 H -0.174 1.174 12 C 0.060 3.940 13 H 0.064 0.936 14 C -0.195 4.195 15 C -0.159 4.159 16 C -0.192 4.192 17 C -0.021 4.021 18 O -0.273 6.273 19 H 0.068 0.932 20 H 0.040 0.960 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.907 1.438 12.264 12.381 hybrid contribution -0.100 1.039 0.010 1.044 sum -1.007 2.478 12.274 12.562 Atomic orbital electron populations 1.22236 0.97758 1.00165 0.99324 1.18472 0.92780 0.91041 0.93318 1.22392 1.00861 0.98266 0.99037 1.20830 1.32801 1.11707 0.87986 0.90654 1.25003 0.95017 0.97162 0.95975 1.69968 1.49202 1.35782 0.98593 0.87394 0.79355 0.86035 0.75974 1.21561 1.23526 1.17423 1.22016 0.96405 0.81550 0.94032 0.93582 1.22404 1.02151 0.99586 0.95353 1.21597 1.00461 0.95600 0.98224 1.22188 1.01665 0.96721 0.98634 1.22459 0.97955 0.95256 0.86403 1.88116 1.73361 1.23007 1.42836 0.93185 0.96007 0.92782 0.94599 0.93050 0.93843 0.92905 0.91275 0.91118 0.92442 0.92336 0.91458 0.91923 0.89820 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.16 37.16 0.27 -2.87 16 2 C 0.04 1.05 0.36 -155.66 -0.06 1.00 16 3 C -0.15 -3.21 7.34 37.16 0.27 -2.94 16 4 C -0.50 -14.14 8.29 -34.44 -0.29 -14.42 16 5 H 0.08 2.38 7.93 -52.49 -0.42 1.96 16 6 C 0.07 2.03 5.32 -17.82 -0.09 1.94 16 7 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 8 Si 0.88 22.17 22.79 -169.99 -3.87 18.29 16 9 H -0.29 -7.14 7.10 56.52 0.40 -6.74 16 10 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 11 H -0.25 -5.79 4.65 56.52 0.26 -5.53 16 12 C 0.12 2.42 1.85 -26.69 -0.05 2.37 16 13 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.16 -2.63 4.71 -26.59 -0.13 -2.75 16 15 C -0.12 -1.68 6.03 -26.55 -0.16 -1.84 16 16 C -0.15 -2.11 6.14 -26.59 -0.16 -2.27 16 17 C 0.06 0.92 6.84 37.20 0.25 1.18 16 18 O -0.35 -7.58 9.15 -35.23 -0.32 -7.90 16 19 H 0.05 1.19 4.31 -51.92 -0.22 0.97 16 20 H 0.02 0.43 6.90 -51.93 -0.36 0.07 16 21 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 22 H 0.04 0.66 6.49 -51.93 -0.34 0.32 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.99 2.26 -51.93 -0.12 0.87 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.07 1.08 6.57 -51.93 -0.34 0.74 16 27 H 0.07 1.21 6.54 -51.93 -0.34 0.87 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 240.64 15.07 3.63 3.63 Total: -1.00 -30.85 240.64 -5.11 -35.96 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.17 Total: -2.07 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.14 Total: -20.61 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.32 Total: -7.90 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.87 Total: 18.29 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.85 -5.11 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.522 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds