Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46995 * 2 1 4 4 C 1.50705 * 109.47125 * 240.00339 * 2 1 3 5 5 H 1.07993 * 119.99733 * 241.20233 * 4 2 1 6 6 C 1.37878 * 119.99933 * 61.19995 * 4 2 1 7 7 N 1.31510 * 119.99999 * 194.16326 * 6 4 2 8 8 Si 1.86803 * 120.00206 * 14.17229 * 6 4 2 9 9 H 1.48491 * 109.47151 * 84.52446 * 8 6 4 10 10 H 1.48497 * 109.47116 * 204.52822 * 8 6 4 11 11 H 1.48505 * 109.46659 * 324.52614 * 8 6 4 12 12 C 1.52996 * 109.47376 * 119.99908 * 2 1 3 13 13 H 1.09001 * 109.48382 * 180.02562 * 12 2 1 14 14 C 1.53091 * 109.47983 * 300.06086 * 12 2 1 15 15 C 1.53179 * 109.16054 * 177.58659 * 14 12 2 16 16 C 1.53180 * 109.03876 * 303.02004 * 15 14 12 17 17 C 1.53088 * 109.16330 * 56.97880 * 16 15 14 18 18 O 1.42904 * 109.47562 * 60.00080 * 12 2 1 19 19 H 1.09007 * 109.47404 * 69.53106 * 1 2 3 20 20 H 1.09004 * 109.47229 * 309.53384 * 1 2 3 21 21 H 1.08992 * 109.47264 * 189.53238 * 1 2 3 22 22 H 1.08996 * 109.46992 * 60.00429 * 3 2 1 23 23 H 1.09004 * 109.46761 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47521 * 300.00103 * 3 2 1 25 25 H 0.96993 * 120.00416 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.52096 * 297.49226 * 14 12 2 27 27 H 1.08998 * 109.52479 * 57.68590 * 14 12 2 28 28 H 1.09001 * 109.54172 * 183.14647 * 15 14 12 29 29 H 1.09002 * 109.54324 * 62.88956 * 15 14 12 30 30 H 1.08999 * 109.52220 * 297.07063 * 16 15 14 31 31 H 1.09004 * 109.57316 * 176.91730 * 16 15 14 32 32 H 1.09000 * 109.48104 * 182.40646 * 17 16 15 33 33 H 1.09009 * 109.48940 * 62.38159 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6371 -1.5996 -1.1316 6 6 1.7198 -0.2250 -2.4826 7 7 1.9100 -0.9759 -3.5453 8 14 1.0263 1.4995 -2.6696 9 1 2.1412 2.4793 -2.7132 10 1 0.2431 1.5843 -3.9284 11 1 0.1431 1.8055 -1.5156 12 6 2.0400 -0.7212 1.2492 13 1 3.1300 -0.7209 1.2496 14 6 1.5286 -0.0006 2.4993 15 6 1.9930 -0.7627 3.7443 16 6 1.4927 -2.2080 3.6609 17 6 2.0054 -2.8434 2.3659 18 8 1.5638 -2.0685 1.2493 19 1 -0.3634 0.3594 -0.9628 20 1 -0.3634 0.6542 0.7926 21 1 -0.3633 -1.0134 0.1702 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9565 -0.8900 25 1 1.6905 -0.6344 -4.4262 26 1 1.9268 1.0138 2.5235 27 1 0.4394 0.0351 2.4793 28 1 1.5856 -0.2866 4.6362 29 1 3.0820 -0.7558 3.7909 30 1 0.4027 -2.2170 3.6644 31 1 1.8643 -2.7730 4.5159 32 1 1.6172 -3.8583 2.2804 33 1 3.0950 -2.8710 2.3810 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213910874.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = -66.767547 kcal Electronic energy + Delta-G solvation = -13761.227877 eV Core-core repulsion = 11593.264561 eV Total energy + Delta-G solvation = -2167.963316 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.55730 -37.24259 -34.42018 -33.88916 -30.82961 -28.00436 -27.04866 -25.79970 -24.47280 -21.46915 -20.33026 -18.08687 -17.42143 -16.92211 -16.46873 -15.42771 -15.34338 -14.89499 -14.72209 -14.26500 -13.90751 -13.66647 -13.53306 -13.25441 -12.74413 -12.36751 -12.08289 -11.99181 -11.78376 -11.64893 -11.37382 -11.06028 -10.95133 -10.56697 -10.33689 -9.98565 -8.24569 -6.21947 1.35312 1.37588 1.49553 2.37857 3.03420 3.21254 3.94969 4.02612 4.08514 4.20588 4.36596 4.40869 4.53224 4.68147 4.69700 4.81958 4.85804 4.92149 4.97526 5.04881 5.12175 5.13910 5.19055 5.29709 5.33183 5.45921 5.54675 5.78996 5.90427 6.39537 6.68143 6.84578 7.40292 8.93632 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053454 B = 0.012599 C = 0.011166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.687309 B = 2221.855591 C = 2506.985067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.034 3.966 3 C -0.148 4.148 4 C -0.497 4.497 5 H 0.022 0.978 6 C 0.007 3.993 7 N -0.953 5.953 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.316 1.316 11 H -0.210 1.210 12 C 0.117 3.883 13 H 0.030 0.970 14 C -0.150 4.150 15 C -0.119 4.119 16 C -0.147 4.147 17 C 0.046 3.954 18 O -0.396 6.396 19 H 0.036 0.964 20 H 0.059 0.941 21 H 0.038 0.962 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.033 0.967 25 H 0.261 0.739 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 3.560 15.448 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 C -0.204 4.204 4 C -0.535 4.535 5 H 0.040 0.960 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.245 1.245 11 H -0.134 1.134 12 C 0.059 3.941 13 H 0.048 0.952 14 C -0.188 4.188 15 C -0.157 4.157 16 C -0.185 4.185 17 C -0.031 4.031 18 O -0.315 6.315 19 H 0.054 0.946 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.095 0.905 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.790 3.463 15.145 15.639 hybrid contribution 0.250 0.228 -0.854 0.919 sum -1.540 3.691 14.291 14.840 Atomic orbital electron populations 1.22131 0.96875 1.00168 0.99811 1.18549 0.93438 0.92360 0.92289 1.22317 1.01037 0.96616 1.00449 1.21124 1.31484 1.10209 0.90644 0.95993 1.25911 0.95879 1.01621 0.95449 1.70139 1.51790 1.38190 0.99267 0.86366 0.79419 0.80371 0.76645 1.20583 1.24542 1.13445 1.21917 0.95492 0.81827 0.94837 0.95187 1.22324 1.02013 1.00125 0.94322 1.21618 1.00942 0.95274 0.97823 1.22138 1.01600 0.96997 0.97723 1.22739 0.98212 0.95486 0.86665 1.88042 1.73939 1.23881 1.45646 0.94566 0.92234 0.94288 0.90459 0.93076 0.94824 0.93027 0.89726 0.91092 0.89524 0.91863 0.91497 0.88923 0.88938 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 7.16 71.98 0.52 -5.24 16 2 C 0.03 1.58 0.36 -52.93 -0.02 1.56 16 3 C -0.15 -5.91 7.34 71.98 0.53 -5.38 16 4 C -0.50 -29.27 8.29 25.60 0.21 -29.06 16 5 H 0.02 1.47 7.93 -2.91 -0.02 1.45 16 6 C 0.01 0.42 5.32 84.66 0.45 0.87 16 7 N -0.95 -62.27 13.96 21.45 0.30 -61.97 16 8 Si 0.94 45.62 22.79 68.60 1.56 47.18 16 9 H -0.28 -12.98 7.10 99.48 0.71 -12.27 16 10 H -0.32 -15.65 7.11 99.48 0.71 -14.95 16 11 H -0.21 -8.90 4.65 99.48 0.46 -8.43 16 12 C 0.12 4.70 1.85 30.62 0.06 4.75 16 13 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 14 C -0.15 -4.46 4.71 30.68 0.14 -4.32 16 15 C -0.12 -2.81 6.03 30.71 0.19 -2.63 16 16 C -0.15 -3.53 6.14 30.68 0.19 -3.35 16 17 C 0.05 1.44 6.84 72.01 0.49 1.94 16 18 O -0.40 -17.01 9.15 -148.98 -1.36 -18.37 16 19 H 0.04 1.64 4.31 -2.38 -0.01 1.63 16 20 H 0.06 2.12 6.90 -2.38 -0.02 2.10 16 21 H 0.04 1.77 7.42 -2.39 -0.02 1.75 16 22 H 0.08 2.45 6.49 -2.39 -0.02 2.44 16 23 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.03 1.41 2.26 -2.39 -0.01 1.41 16 25 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 26 H 0.08 2.24 6.57 -2.39 -0.02 2.22 16 27 H 0.07 2.11 6.54 -2.39 -0.02 2.10 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -69.93 240.64 4.08 -65.85 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.83 Total: 8.16 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 2.75 Total: -40.85 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.30 Total: -61.97 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.36 Total: -18.37 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.56 Total: 47.18 kcal Total: -69.93 4.08 -65.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213910874.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.921 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds