Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47176 * 240.00051 * 3 2 1 5 5 H 1.48499 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46922 * 120.00316 * 3 2 1 7 7 C 1.37875 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47310 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47353 * 180.02562 * 10 9 7 12 12 N 1.45399 * 111.00358 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00373 * 115.78914 * 12 11 10 14 14 C 1.53034 * 109.52676 * 185.84225 * 13 12 11 15 15 C 1.53126 * 109.27454 * 300.81918 * 14 13 12 16 16 C 1.53119 * 109.16048 * 57.65518 * 15 14 13 17 17 C 1.46850 * 111.00072 * 240.00028 * 12 11 10 18 18 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46724 * 59.99726 * 9 7 2 20 20 H 1.08993 * 109.46878 * 299.99899 * 9 7 2 21 21 H 1.08994 * 109.47517 * 59.99778 * 10 9 7 22 22 H 1.09006 * 109.47278 * 299.99775 * 10 9 7 23 23 H 1.00899 * 110.99487 * 303.95317 * 11 10 9 24 24 H 1.08995 * 109.46315 * 65.82076 * 13 12 11 25 25 H 1.09005 * 109.45975 * 305.85590 * 13 12 11 26 26 H 1.08997 * 109.50792 * 180.88024 * 14 13 12 27 27 H 1.09006 * 109.50471 * 60.75677 * 14 13 12 28 28 H 1.08999 * 109.52028 * 177.55723 * 15 14 13 29 29 H 1.08993 * 109.52259 * 297.74866 * 15 14 13 30 30 H 1.09004 * 109.50440 * 62.28501 * 16 15 14 31 31 H 1.08999 * 109.50261 * 182.36611 * 16 15 14 32 32 H 1.09005 * 109.46186 * 54.14027 * 17 12 11 33 33 H 1.09004 * 109.45360 * 294.17182 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 -0.0001 12 7 2.4259 -6.0642 0.0005 13 6 2.2927 -6.8487 1.2347 14 6 3.3662 -7.9389 1.2662 15 6 3.2021 -8.8453 0.0430 16 6 3.2966 -7.9964 -1.2279 17 6 2.2252 -6.9045 -1.1870 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 2.8720 -3.6043 0.8904 22 1 2.8720 -3.6043 -0.8895 23 1 0.8742 -4.9845 0.7811 24 1 1.3056 -7.3098 1.2672 25 1 2.4156 -6.1930 2.0968 26 1 3.2572 -8.5308 2.1749 27 1 4.3538 -7.4779 1.2476 28 1 3.9912 -9.5972 0.0383 29 1 2.2299 -9.3365 0.0814 30 1 4.2831 -7.5363 -1.2856 31 1 3.1387 -8.6295 -2.1010 32 1 2.2991 -6.2894 -2.0839 33 1 1.2384 -7.3654 -1.1430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214978524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = 8.178721 kcal Electronic energy + Delta-G solvation = -12631.312790 eV Core-core repulsion = 10498.892140 eV Total energy + Delta-G solvation = -2132.420651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.52709 -34.94343 -32.96877 -30.90441 -30.74609 -27.67998 -24.20608 -22.97562 -22.45242 -20.41916 -19.58176 -16.63591 -15.99176 -15.02722 -14.53638 -14.43913 -14.16305 -13.77717 -13.29400 -13.04618 -12.66142 -12.15195 -12.10645 -11.17113 -11.08859 -10.92130 -10.78320 -10.67082 -10.44292 -10.41032 -10.07466 -9.37023 -9.15691 -8.75652 -8.32046 -7.58537 -5.97809 -4.00191 3.36005 3.39805 3.42384 3.69152 4.49135 4.76027 4.87431 4.93950 5.26510 5.37606 5.38454 5.43544 5.59594 5.67019 5.80005 5.90051 5.97454 6.04238 6.12433 6.26659 6.36674 6.48258 6.67415 7.04105 7.18543 7.48309 7.71223 7.88873 8.07796 8.16986 8.46146 9.06594 9.63405 11.13766 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.077605 B = 0.005995 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.714006 B = 4669.612689 C = 4687.820377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.026 3.974 10 C 0.079 3.921 11 N -0.531 5.531 12 N -0.386 5.386 13 C 0.031 3.969 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.070 3.930 18 H 0.261 0.739 19 H 0.025 0.975 20 H 0.012 0.988 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.325 0.675 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -15.328 0.808 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.049 4.049 11 N -0.251 5.251 12 N -0.200 5.200 13 C -0.099 4.099 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.059 4.059 18 H 0.071 0.929 19 H 0.043 0.957 20 H 0.031 0.969 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.142 0.858 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.216 -15.023 0.095 15.903 hybrid contribution -0.145 0.660 1.067 1.263 sum 5.072 -14.363 1.162 15.276 Atomic orbital electron populations 1.69964 1.06059 1.26711 1.50670 1.24998 0.94843 0.99221 0.95280 0.86623 0.79532 0.82992 0.78634 1.20175 1.21291 1.20278 1.21111 0.93033 0.90779 1.50887 0.92647 1.19079 0.94106 0.90446 0.97628 1.22147 0.97085 0.86248 0.99440 1.64079 1.14218 0.99124 1.47706 1.65133 1.46294 1.07201 1.01404 1.22522 0.97736 0.95844 0.93753 1.21551 0.99664 0.96155 0.97776 1.21591 1.01427 0.97723 0.95159 1.21628 1.00132 0.96543 0.97290 1.21967 0.96439 0.93540 0.93928 0.92943 0.95692 0.96918 0.96225 0.91886 0.85789 0.94745 0.91021 0.91742 0.91089 0.91999 0.92384 0.91171 0.91536 0.90305 0.95120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.69 5.23 -27.89 -0.15 0.55 16 10 C 0.08 1.77 6.07 -3.83 -0.02 1.75 16 11 N -0.53 -10.26 6.75 -10.37 -0.07 -10.33 16 12 N -0.39 -6.37 4.78 -113.82 -0.54 -6.91 16 13 C 0.03 0.42 5.41 -3.84 -0.02 0.40 16 14 C -0.11 -1.26 6.09 -26.65 -0.16 -1.42 16 15 C -0.12 -1.24 6.00 -26.60 -0.16 -1.40 16 16 C -0.12 -1.34 6.09 -26.65 -0.16 -1.50 16 17 C 0.07 1.01 5.90 -3.83 -0.02 0.99 16 18 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 19 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 23 H 0.33 6.03 8.14 -174.66 -1.42 4.61 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -30.24 269.23 -8.83 -39.07 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.88 Total: -1.91 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -1.11 Total: -14.36 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.12 Total: -43.75 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.24 -8.83 -39.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214978524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.251 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds