Wall clock time and date at job start Mon Mar 30 2020 02:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47176 * 240.00051 * 3 2 1 5 5 H 1.48499 * 109.46911 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46922 * 120.00316 * 3 2 1 7 7 C 1.37875 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47310 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47353 * 180.02562 * 10 9 7 12 12 N 1.45399 * 111.00358 * 180.02562 * 11 10 9 13 13 C 1.46845 * 111.00373 * 115.78914 * 12 11 10 14 14 C 1.53034 * 109.52676 * 185.84225 * 13 12 11 15 15 C 1.53126 * 109.27454 * 300.81918 * 14 13 12 16 16 C 1.53119 * 109.16048 * 57.65518 * 15 14 13 17 17 C 1.46850 * 111.00072 * 240.00028 * 12 11 10 18 18 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.46724 * 59.99726 * 9 7 2 20 20 H 1.08993 * 109.46878 * 299.99899 * 9 7 2 21 21 H 1.08994 * 109.47517 * 59.99778 * 10 9 7 22 22 H 1.09006 * 109.47278 * 299.99775 * 10 9 7 23 23 H 1.00899 * 110.99487 * 303.95317 * 11 10 9 24 24 H 1.08995 * 109.46315 * 65.82076 * 13 12 11 25 25 H 1.09005 * 109.45975 * 305.85590 * 13 12 11 26 26 H 1.08997 * 109.50792 * 180.88024 * 14 13 12 27 27 H 1.09006 * 109.50471 * 60.75677 * 14 13 12 28 28 H 1.08999 * 109.52028 * 177.55723 * 15 14 13 29 29 H 1.08993 * 109.52259 * 297.74866 * 15 14 13 30 30 H 1.09004 * 109.50440 * 62.28501 * 16 15 14 31 31 H 1.08999 * 109.50261 * 182.36611 * 16 15 14 32 32 H 1.09005 * 109.46186 * 54.14027 * 17 12 11 33 33 H 1.09004 * 109.45360 * 294.17182 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 -0.0001 12 7 2.4259 -6.0642 0.0005 13 6 2.2927 -6.8487 1.2347 14 6 3.3662 -7.9389 1.2662 15 6 3.2021 -8.8453 0.0430 16 6 3.2966 -7.9964 -1.2279 17 6 2.2252 -6.9045 -1.1870 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 2.8720 -3.6043 0.8904 22 1 2.8720 -3.6043 -0.8895 23 1 0.8742 -4.9845 0.7811 24 1 1.3056 -7.3098 1.2672 25 1 2.4156 -6.1930 2.0968 26 1 3.2572 -8.5308 2.1749 27 1 4.3538 -7.4779 1.2476 28 1 3.9912 -9.5972 0.0383 29 1 2.2299 -9.3365 0.0814 30 1 4.2831 -7.5363 -1.2856 31 1 3.1387 -8.6295 -2.1010 32 1 2.2991 -6.2894 -2.0839 33 1 1.2384 -7.3654 -1.1430 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214978524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:37 Heat of formation + Delta-G solvation = -11.338416 kcal Electronic energy + Delta-G solvation = -12632.159117 eV Core-core repulsion = 10498.892140 eV Total energy + Delta-G solvation = -2133.266977 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67854 -36.58379 -34.88062 -32.58393 -31.76941 -29.43892 -26.04942 -24.04390 -23.77201 -22.33798 -20.60126 -18.59678 -17.58513 -16.49197 -16.36777 -15.60166 -15.46225 -15.11971 -14.58078 -14.37816 -14.19749 -13.89423 -13.27648 -13.06709 -12.85572 -12.49304 -12.18759 -12.11363 -11.70447 -11.64081 -11.42151 -11.36444 -11.15459 -10.57894 -10.19121 -9.03727 -8.20940 -6.32752 1.41044 1.44771 1.52732 2.29164 2.47002 3.12557 3.70461 3.93201 4.04517 4.16667 4.29010 4.40462 4.52298 4.58951 4.65651 4.73062 4.89100 4.94300 4.99799 5.02626 5.16413 5.20355 5.29522 5.42083 5.48595 5.59629 5.75144 5.92602 6.13702 6.25700 6.71553 6.83459 7.36527 8.91217 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.077605 B = 0.005995 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.714006 B = 4669.612689 C = 4687.820377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.103 3.897 11 N -0.539 5.539 12 N -0.395 5.395 13 C 0.028 3.972 14 C -0.108 4.108 15 C -0.118 4.118 16 C -0.111 4.111 17 C 0.066 3.934 18 H 0.265 0.735 19 H -0.004 1.004 20 H -0.007 1.007 21 H 0.017 0.983 22 H 0.055 0.945 23 H 0.328 0.672 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -16.228 1.030 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.026 4.026 11 N -0.260 5.260 12 N -0.211 5.211 13 C -0.101 4.101 14 C -0.147 4.147 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.062 4.062 18 H 0.074 0.926 19 H 0.014 0.986 20 H 0.011 0.989 21 H 0.035 0.965 22 H 0.074 0.926 23 H 0.145 0.855 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.557 -15.944 0.320 17.243 hybrid contribution -0.600 0.858 0.994 1.443 sum 5.957 -15.086 1.313 16.273 Atomic orbital electron populations 1.70098 1.07848 1.27972 1.51251 1.25975 0.95780 1.03380 0.94438 0.85441 0.78225 0.77777 0.79230 1.19140 1.20637 1.19113 1.21527 0.93534 0.92027 1.51274 0.92169 1.18901 0.94238 0.92101 0.95156 1.21658 0.95594 0.86539 0.98821 1.63918 1.14682 0.99309 1.48052 1.65119 1.45349 1.07252 1.03359 1.22633 0.99205 0.96222 0.92035 1.21564 0.98078 0.95529 0.99524 1.21599 1.02677 0.97650 0.93629 1.21619 0.98409 0.95794 0.99142 1.22075 0.97870 0.93867 0.92375 0.92648 0.98590 0.98900 0.96460 0.92639 0.85488 0.94240 0.91815 0.89460 0.91691 0.89688 0.91765 0.91701 0.89382 0.92064 0.95088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.97 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.91 5.23 29.85 0.16 2.06 16 10 C 0.10 4.71 6.07 86.30 0.52 5.24 16 11 N -0.54 -21.19 6.75 -186.73 -1.26 -22.45 16 12 N -0.40 -12.86 4.78 -514.01 -2.46 -15.32 16 13 C 0.03 0.73 5.41 86.33 0.47 1.20 16 14 C -0.11 -2.14 6.09 30.65 0.19 -1.96 16 15 C -0.12 -2.03 6.00 30.68 0.18 -1.85 16 16 C -0.11 -2.27 6.09 30.65 0.19 -2.09 16 17 C 0.07 1.87 5.90 86.32 0.51 2.38 16 18 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 19 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 20 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 21 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 23 H 0.33 12.42 8.14 -204.85 -1.67 10.75 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -64.98 269.23 0.89 -64.09 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.61 Total: 10.27 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 2.91 Total: -26.14 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -3.43 Total: -95.08 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.98 0.89 -64.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214978524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.753 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds