Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47440 * 2 1 4 4 C 1.52999 * 109.47367 * 239.99830 * 2 1 3 5 5 C 1.52998 * 109.47367 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47054 * 59.99870 * 5 4 2 7 7 O 1.42910 * 109.47211 * 60.00348 * 6 5 4 8 8 C 1.50699 * 109.46957 * 179.97438 * 6 5 4 9 9 H 1.08005 * 120.00049 * 26.92574 * 8 6 5 10 10 C 1.37875 * 120.00262 * 206.91681 * 8 6 5 11 11 N 1.31513 * 120.00050 * 174.23499 * 10 8 6 12 12 Si 1.86802 * 120.00071 * 354.23692 * 10 8 6 13 13 H 1.48501 * 109.47126 * 86.54190 * 12 10 8 14 14 H 1.48496 * 109.47484 * 206.54690 * 12 10 8 15 15 H 1.48500 * 109.46963 * 326.54629 * 12 10 8 16 16 C 1.52991 * 109.47279 * 300.00139 * 6 5 4 17 17 H 1.09002 * 109.47374 * 180.02562 * 16 6 5 18 18 C 1.53003 * 109.47010 * 299.99975 * 16 6 5 19 19 C 1.53002 * 109.47664 * 60.00158 * 16 6 5 20 20 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47005 * 300.00269 * 1 2 3 22 22 H 1.08993 * 109.47411 * 59.99954 * 1 2 3 23 23 H 1.09002 * 109.46740 * 59.99684 * 4 2 1 24 24 H 1.08998 * 109.46979 * 300.00452 * 4 2 1 25 25 H 1.09002 * 109.46747 * 299.99961 * 5 4 2 26 26 H 1.08999 * 109.46757 * 179.97438 * 5 4 2 27 27 H 0.96694 * 113.99536 * 55.07509 * 7 6 5 28 28 H 0.97006 * 119.99999 * 179.97438 * 11 10 8 29 29 H 1.08993 * 109.47183 * 60.00403 * 18 16 6 30 30 H 1.09007 * 109.47235 * 180.02562 * 18 16 6 31 31 H 1.08997 * 109.47041 * 299.99663 * 18 16 6 32 32 H 1.09000 * 109.46932 * 59.99366 * 19 16 6 33 33 H 1.08994 * 109.47531 * 180.02562 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0003 7 8 3.6047 -2.7891 0.0001 8 6 5.5875 -1.4415 -0.0009 9 1 6.1273 -0.6579 -0.5119 10 6 6.2772 -2.4417 0.6509 11 7 7.5873 -2.5065 0.5560 12 14 5.3508 -3.7048 1.6687 13 1 4.9104 -4.8199 0.7925 14 1 6.2420 -4.2334 2.7324 15 1 4.1635 -3.0651 2.2903 16 6 3.5705 -0.7203 1.2489 17 1 3.9346 -1.2335 2.1389 18 6 4.0800 0.7224 1.2485 19 6 2.0405 -0.7208 1.2493 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.6766 -0.2074 -2.1392 24 1 1.6767 -1.7489 -1.2492 25 1 3.9329 0.3071 -1.2498 26 1 3.9333 -1.2350 -2.1393 27 1 3.8267 -3.2847 -0.8000 28 1 8.0726 -3.2100 1.0149 29 1 3.7163 1.2360 0.3586 30 1 3.7170 1.2362 2.1388 31 1 5.1700 0.7228 1.2483 32 1 1.6776 -1.7486 1.2495 33 1 1.6772 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218187909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = -78.088602 kcal Electronic energy + Delta-G solvation = -13963.049844 eV Core-core repulsion = 11794.595610 eV Total energy + Delta-G solvation = -2168.454234 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.11018 -35.09384 -32.46042 -31.70083 -30.32472 -26.78299 -25.84685 -23.34098 -21.63218 -20.25185 -17.82961 -16.96845 -15.40139 -14.95473 -14.52430 -14.03780 -13.36058 -13.05571 -12.78025 -12.40085 -12.03129 -11.72486 -11.58669 -11.41586 -11.10538 -10.85243 -10.76836 -10.55368 -10.13064 -10.02816 -9.84405 -9.51168 -9.34696 -8.82467 -8.35489 -8.11083 -6.04039 -4.12916 3.55703 3.62065 3.81047 4.63657 5.20708 5.22816 5.31353 5.38789 5.53514 5.82470 5.94870 6.09407 6.11431 6.14507 6.19115 6.22984 6.32085 6.37933 6.59318 6.64569 6.65163 6.70299 6.76375 6.85517 7.05993 7.21721 7.37153 7.49028 7.72949 8.31208 8.82046 8.99794 9.60295 11.05568 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047517 B = 0.014173 C = 0.013661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.117626 B = 1975.068111 C = 2049.195668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.132 4.132 6 C 0.229 3.771 7 O -0.566 6.566 8 C -0.548 4.548 9 H 0.074 0.926 10 C 0.069 3.931 11 N -0.898 5.898 12 Si 0.948 3.052 13 H -0.296 1.296 14 H -0.332 1.332 15 H -0.266 1.266 16 C -0.075 4.075 17 H 0.068 0.932 18 C -0.134 4.134 19 C -0.108 4.108 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.364 0.636 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.108 3.587 -1.053 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.170 4.170 6 C 0.189 3.811 7 O -0.373 6.373 8 C -0.586 4.586 9 H 0.092 0.908 10 C -0.134 4.134 11 N -0.535 5.535 12 Si 0.785 3.215 13 H -0.224 1.224 14 H -0.265 1.265 15 H -0.192 1.192 16 C -0.094 4.094 17 H 0.086 0.914 18 C -0.191 4.191 19 C -0.145 4.145 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.211 0.789 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.175 3.710 -0.441 11.783 hybrid contribution -0.044 -0.830 -0.051 0.832 sum -11.219 2.880 -0.491 11.593 Atomic orbital electron populations 1.21836 0.96475 1.01244 1.00623 1.21134 0.94080 0.99661 0.96040 0.91565 1.21553 0.96971 1.00179 0.96050 1.22153 0.93586 1.01458 0.99771 1.19163 0.92867 0.78445 0.90578 1.86093 1.80614 1.26863 1.43763 1.21387 0.89304 1.12225 1.35666 0.90793 1.25124 0.94829 0.98001 0.95482 1.69992 1.07225 1.33628 1.42637 0.85708 0.77451 0.80086 0.78258 1.22401 1.26453 1.19221 1.21235 0.92641 0.95984 0.99508 0.91359 1.21779 1.02547 0.95421 0.99400 1.21630 0.97041 1.00014 0.95824 0.93058 0.93354 0.93422 0.93684 0.92099 0.91956 0.92743 0.78851 0.92824 0.93326 0.94605 0.91283 0.92014 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 2 C -0.09 -1.44 2.45 -90.62 -0.22 -1.66 16 3 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 4 C -0.11 -1.82 5.06 -26.73 -0.14 -1.95 16 5 C -0.13 -2.56 4.58 -26.73 -0.12 -2.68 16 6 C 0.23 5.12 0.32 -91.78 -0.03 5.09 16 7 O -0.57 -12.62 7.03 -35.23 -0.25 -12.87 16 8 C -0.55 -14.84 7.50 -34.44 -0.26 -15.10 16 9 H 0.07 2.19 8.06 -52.48 -0.42 1.76 16 10 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 11 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 12 Si 0.95 24.38 24.31 -169.99 -4.13 20.25 16 13 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 14 H -0.33 -8.82 7.11 56.52 0.40 -8.42 16 15 H -0.27 -6.73 5.32 56.52 0.30 -6.43 16 16 C -0.07 -1.58 2.18 -90.62 -0.20 -1.78 16 17 H 0.07 1.61 5.75 -51.93 -0.30 1.31 16 18 C -0.13 -2.59 8.25 37.16 0.31 -2.29 16 19 C -0.11 -1.94 4.59 -26.73 -0.12 -2.07 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 25 H 0.06 1.21 6.43 -51.93 -0.33 0.88 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.36 7.36 8.90 45.56 0.41 7.76 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.05 0.87 4.81 -51.93 -0.25 0.62 16 30 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 1.48 7.22 -51.93 -0.37 1.11 16 32 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 242.66 15.07 3.66 3.66 Total: -1.00 -29.86 242.66 -5.09 -34.95 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.60 Total: 2.86 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -0.54 Total: -22.14 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.25 Total: -12.87 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -4.13 Total: 20.25 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.86 -5.09 -34.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218187909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.143 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds