Wall clock time and date at job start Mon Mar 30 2020 02:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47593 * 2 1 4 4 C 1.53001 * 109.47177 * 239.99848 * 2 1 3 5 5 C 1.52998 * 109.47061 * 300.00359 * 4 2 1 6 6 C 1.53005 * 109.46778 * 299.99662 * 5 4 2 7 7 O 1.42893 * 109.47434 * 299.99896 * 6 5 4 8 8 C 1.50704 * 109.47004 * 179.97438 * 6 5 4 9 9 H 1.07997 * 120.00148 * 324.99542 * 8 6 5 10 10 C 1.37878 * 119.99783 * 144.99527 * 8 6 5 11 11 N 1.31514 * 119.99678 * 209.11784 * 10 8 6 12 12 Si 1.86791 * 120.00100 * 29.11644 * 10 8 6 13 13 H 1.48500 * 109.47265 * 83.53217 * 12 10 8 14 14 H 1.48503 * 109.47348 * 203.53205 * 12 10 8 15 15 H 1.48498 * 109.47603 * 323.53277 * 12 10 8 16 16 C 1.53001 * 109.47048 * 60.00330 * 6 5 4 17 17 H 1.08999 * 109.47150 * 59.99916 * 16 6 5 18 18 C 1.53005 * 109.47048 * 179.97438 * 16 6 5 19 19 C 1.52998 * 109.47061 * 299.99496 * 16 6 5 20 20 H 1.09000 * 109.47747 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46983 * 300.00296 * 1 2 3 22 22 H 1.09001 * 109.47208 * 60.00000 * 1 2 3 23 23 H 1.08999 * 109.47150 * 179.97438 * 4 2 1 24 24 H 1.09001 * 109.46927 * 59.99980 * 4 2 1 25 25 H 1.08998 * 109.47317 * 180.02562 * 5 4 2 26 26 H 1.09001 * 109.47306 * 59.99268 * 5 4 2 27 27 H 0.96698 * 114.00524 * 294.50916 * 7 6 5 28 28 H 0.97001 * 120.00018 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.47213 * 59.99955 * 18 16 6 30 30 H 1.08998 * 109.46912 * 179.97438 * 18 16 6 31 31 H 1.09002 * 109.46681 * 299.99514 * 18 16 6 32 32 H 1.09001 * 109.47306 * 300.00732 * 19 16 6 33 33 H 1.08998 * 109.47317 * 179.97438 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1637 -1.2492 6 6 2.0399 -2.8850 0.0001 7 8 3.4689 -2.8851 0.0001 8 6 1.5370 -4.3056 0.0004 9 1 0.5576 -4.5319 -0.3945 10 6 2.3273 -5.3165 0.5050 11 7 2.2122 -6.5387 0.0333 12 14 3.5615 -4.9501 1.8584 13 1 2.8757 -4.9803 3.1752 14 1 4.6377 -5.9731 1.8372 15 1 4.1524 -3.6055 1.6388 16 6 1.5299 -2.1637 1.2493 17 1 0.4399 -2.1637 1.2493 18 6 2.0394 -2.8853 2.4986 19 6 2.0400 -0.7212 1.2493 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 3.1299 -0.7209 -1.2495 24 1 1.6766 -0.2075 -2.1392 25 1 1.8936 -2.6778 -2.1389 26 1 0.4399 -2.1637 -1.2491 27 1 3.8622 -3.3980 -0.7191 28 1 2.7684 -7.2499 0.3880 29 1 3.1294 -2.8857 2.4988 30 1 1.6765 -2.3712 3.3885 31 1 1.6756 -3.9128 2.4984 32 1 3.1300 -0.7213 1.2492 33 1 1.6763 -0.2072 2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218188047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:39 Heat of formation + Delta-G solvation = -46.670106 kcal Electronic energy + Delta-G solvation = -14142.691071 eV Core-core repulsion = 11975.599246 eV Total energy + Delta-G solvation = -2167.091825 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.08992 -34.98095 -32.42632 -31.87620 -29.91658 -26.79474 -25.93020 -24.23998 -21.09509 -19.94734 -18.06274 -16.91020 -15.11791 -14.81507 -14.73262 -13.98244 -13.70427 -13.04084 -12.74810 -12.58405 -12.32647 -11.88890 -11.42771 -11.26223 -11.05700 -10.96665 -10.55789 -10.25261 -9.97437 -9.80222 -9.54156 -9.44561 -9.02478 -8.83817 -8.15249 -7.69376 -6.17619 -4.07914 3.47820 3.62597 3.73633 4.56776 5.09345 5.33306 5.38730 5.42953 5.72011 5.89296 6.02554 6.03996 6.14458 6.19901 6.26021 6.35123 6.41671 6.52365 6.56908 6.62108 6.70815 6.77139 6.86284 7.00523 7.08778 7.18551 7.36030 7.57881 7.75823 8.29130 8.86781 9.09353 9.58042 10.92742 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047335 B = 0.015917 C = 0.014316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.383811 B = 1758.650526 C = 1955.360574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.054 0.946 4 C -0.110 4.110 5 C -0.129 4.129 6 C 0.233 3.767 7 O -0.567 6.567 8 C -0.570 4.570 9 H 0.069 0.931 10 C 0.082 3.918 11 N -0.875 5.875 12 Si 0.883 3.117 13 H -0.298 1.298 14 H -0.326 1.326 15 H -0.204 1.204 16 C -0.065 4.065 17 H 0.068 0.932 18 C -0.178 4.178 19 C -0.109 4.109 20 H 0.067 0.933 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.360 0.640 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 10.411 0.571 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.072 0.928 4 C -0.148 4.148 5 C -0.167 4.167 6 C 0.193 3.807 7 O -0.374 6.374 8 C -0.606 4.606 9 H 0.087 0.913 10 C -0.124 4.124 11 N -0.509 5.509 12 Si 0.716 3.284 13 H -0.226 1.226 14 H -0.258 1.258 15 H -0.128 1.128 16 C -0.083 4.083 17 H 0.086 0.914 18 C -0.234 4.234 19 C -0.146 4.146 20 H 0.086 0.914 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.207 0.793 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.018 10.607 1.076 10.661 hybrid contribution 0.412 -0.465 0.255 0.671 sum 0.394 10.141 1.331 10.236 Atomic orbital electron populations 1.21944 0.96100 1.02444 1.00232 1.21031 0.95316 0.98003 0.96189 0.92768 1.21520 1.00714 0.96674 0.95854 1.22141 1.00391 0.93900 1.00248 1.18967 0.78326 0.93599 0.89829 1.86589 1.21704 1.75655 1.53408 1.21275 1.05010 0.90110 1.44219 0.91286 1.25068 0.96653 0.94495 0.96140 1.70199 1.39886 1.02457 1.38356 0.87707 0.80282 0.78826 0.81551 1.22616 1.25750 1.12792 1.21160 0.99116 0.92336 0.95732 0.91391 1.22526 1.02424 1.01801 0.96676 1.21640 1.00923 0.96386 0.95681 0.91428 0.93593 0.93647 0.92026 0.93833 0.92833 0.92440 0.79297 0.92743 0.91259 0.94522 0.90670 0.91834 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.50 37.15 0.32 -1.93 16 2 C -0.09 -1.40 3.19 -90.62 -0.29 -1.69 16 3 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.88 5.30 -26.73 -0.14 -2.02 16 5 C -0.13 -2.58 4.65 -26.73 -0.12 -2.70 16 6 C 0.23 5.24 0.54 -91.77 -0.05 5.19 16 7 O -0.57 -12.61 7.03 -35.23 -0.25 -12.86 16 8 C -0.57 -15.47 8.06 -34.44 -0.28 -15.75 16 9 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 10 C 0.08 2.29 5.08 -17.82 -0.09 2.20 16 11 N -0.87 -26.25 13.96 55.43 0.77 -25.48 16 12 Si 0.88 22.00 21.45 -169.99 -3.65 18.35 16 13 H -0.30 -7.42 6.20 56.52 0.35 -7.07 16 14 H -0.33 -8.48 7.11 56.52 0.40 -8.08 16 15 H -0.20 -4.80 3.96 56.52 0.22 -4.58 16 16 C -0.06 -1.35 1.79 -90.62 -0.16 -1.51 16 17 H 0.07 1.41 6.43 -51.93 -0.33 1.08 16 18 C -0.18 -3.88 6.58 37.16 0.24 -3.63 16 19 C -0.11 -1.95 4.59 -26.73 -0.12 -2.08 16 20 H 0.07 1.12 4.81 -51.93 -0.25 0.87 16 21 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.15 6.43 -51.93 -0.33 0.81 16 27 H 0.36 7.59 8.75 45.56 0.40 7.98 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.07 1.54 4.20 -51.93 -0.22 1.33 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.82 4.36 -51.93 -0.23 1.59 16 32 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 231.67 15.07 3.49 3.49 Total: -1.00 -29.13 231.67 -4.83 -33.96 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.51 Total: 6.44 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -0.70 Total: -23.91 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.25 Total: -12.86 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -3.65 Total: 18.35 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.13 -4.83 -33.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.706 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds