Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47593 * 2 1 4 4 C 1.53001 * 109.47177 * 239.99848 * 2 1 3 5 5 C 1.52998 * 109.47061 * 300.00359 * 4 2 1 6 6 C 1.53005 * 109.46778 * 299.99662 * 5 4 2 7 7 O 1.42893 * 109.47434 * 299.99896 * 6 5 4 8 8 C 1.50704 * 109.47004 * 179.97438 * 6 5 4 9 9 H 1.07997 * 120.00148 * 324.99542 * 8 6 5 10 10 C 1.37878 * 119.99783 * 144.99527 * 8 6 5 11 11 N 1.31514 * 119.99678 * 209.11784 * 10 8 6 12 12 Si 1.86791 * 120.00100 * 29.11644 * 10 8 6 13 13 H 1.48500 * 109.47265 * 83.53217 * 12 10 8 14 14 H 1.48503 * 109.47348 * 203.53205 * 12 10 8 15 15 H 1.48498 * 109.47603 * 323.53277 * 12 10 8 16 16 C 1.53001 * 109.47048 * 60.00330 * 6 5 4 17 17 H 1.08999 * 109.47150 * 59.99916 * 16 6 5 18 18 C 1.53005 * 109.47048 * 179.97438 * 16 6 5 19 19 C 1.52998 * 109.47061 * 299.99496 * 16 6 5 20 20 H 1.09000 * 109.47747 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46983 * 300.00296 * 1 2 3 22 22 H 1.09001 * 109.47208 * 60.00000 * 1 2 3 23 23 H 1.08999 * 109.47150 * 179.97438 * 4 2 1 24 24 H 1.09001 * 109.46927 * 59.99980 * 4 2 1 25 25 H 1.08998 * 109.47317 * 180.02562 * 5 4 2 26 26 H 1.09001 * 109.47306 * 59.99268 * 5 4 2 27 27 H 0.96698 * 114.00524 * 294.50916 * 7 6 5 28 28 H 0.97001 * 120.00018 * 179.97438 * 11 10 8 29 29 H 1.08999 * 109.47213 * 59.99955 * 18 16 6 30 30 H 1.08998 * 109.46912 * 179.97438 * 18 16 6 31 31 H 1.09002 * 109.46681 * 299.99514 * 18 16 6 32 32 H 1.09001 * 109.47306 * 300.00732 * 19 16 6 33 33 H 1.08998 * 109.47317 * 179.97438 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5299 -2.1637 -1.2492 6 6 2.0399 -2.8850 0.0001 7 8 3.4689 -2.8851 0.0001 8 6 1.5370 -4.3056 0.0004 9 1 0.5576 -4.5319 -0.3945 10 6 2.3273 -5.3165 0.5050 11 7 2.2122 -6.5387 0.0333 12 14 3.5615 -4.9501 1.8584 13 1 2.8757 -4.9803 3.1752 14 1 4.6377 -5.9731 1.8372 15 1 4.1524 -3.6055 1.6388 16 6 1.5299 -2.1637 1.2493 17 1 0.4399 -2.1637 1.2493 18 6 2.0394 -2.8853 2.4986 19 6 2.0400 -0.7212 1.2493 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 3.1299 -0.7209 -1.2495 24 1 1.6766 -0.2075 -2.1392 25 1 1.8936 -2.6778 -2.1389 26 1 0.4399 -2.1637 -1.2491 27 1 3.8622 -3.3980 -0.7191 28 1 2.7684 -7.2499 0.3880 29 1 3.1294 -2.8857 2.4988 30 1 1.6765 -2.3712 3.3885 31 1 1.6756 -3.9128 2.4984 32 1 3.1300 -0.7213 1.2492 33 1 1.6763 -0.2072 2.1390 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218188047.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = -67.252912 kcal Electronic energy + Delta-G solvation = -14143.583609 eV Core-core repulsion = 11975.599246 eV Total energy + Delta-G solvation = -2167.984363 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.69398 -36.60346 -34.40620 -33.66165 -31.52517 -28.37438 -27.51551 -26.00962 -22.71166 -21.56871 -19.70151 -18.82728 -17.03405 -16.60652 -16.28123 -15.54546 -15.27027 -14.71611 -14.53697 -14.36680 -13.93655 -13.55580 -13.00729 -12.85244 -12.60539 -12.54098 -12.14409 -11.84385 -11.67142 -11.55480 -11.18368 -11.04762 -10.82540 -10.61291 -10.11184 -9.56992 -8.38487 -6.29783 1.46465 1.56692 1.72542 2.46078 2.96019 3.80814 4.03439 4.05804 4.17933 4.40592 4.46237 4.67870 4.71282 4.76513 4.82304 4.92602 4.94304 5.05189 5.16847 5.21725 5.26201 5.30601 5.31961 5.51208 5.54850 5.62166 5.77061 5.78623 5.88582 6.15584 6.68309 7.16821 7.43976 8.75968 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047335 B = 0.015917 C = 0.014316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.383811 B = 1758.650526 C = 1955.360574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.231 3.769 7 O -0.566 6.566 8 C -0.569 4.569 9 H 0.026 0.974 10 C 0.033 3.967 11 N -0.925 5.925 12 Si 0.944 3.056 13 H -0.298 1.298 14 H -0.342 1.342 15 H -0.175 1.175 16 C -0.066 4.066 17 H 0.064 0.936 18 C -0.180 4.180 19 C -0.103 4.103 20 H 0.043 0.957 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.365 0.635 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 13.419 1.282 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.141 4.141 5 C -0.164 4.164 6 C 0.191 3.809 7 O -0.373 6.373 8 C -0.606 4.606 9 H 0.044 0.956 10 C -0.167 4.167 11 N -0.562 5.562 12 Si 0.776 3.224 13 H -0.226 1.226 14 H -0.275 1.275 15 H -0.098 1.098 16 C -0.085 4.085 17 H 0.083 0.917 18 C -0.236 4.236 19 C -0.140 4.140 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.212 0.788 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.549 13.644 1.783 13.771 hybrid contribution 0.128 -1.438 -0.033 1.445 sum 0.677 12.206 1.750 12.349 Atomic orbital electron populations 1.21917 0.95330 1.01419 1.01905 1.21068 0.95953 0.98963 0.94424 0.89956 1.21471 1.00550 0.94359 0.97694 1.22032 1.00089 0.96050 0.98229 1.18967 0.78398 0.91244 0.92266 1.86531 1.21326 1.75563 1.53836 1.21605 1.03156 0.93076 1.42749 0.95556 1.25821 0.98944 0.94165 0.97767 1.70304 1.41963 1.03701 1.40215 0.86823 0.77672 0.79253 0.78661 1.22613 1.27456 1.09832 1.21106 0.98976 0.94372 0.94009 0.91723 1.22487 1.02116 1.00460 0.98579 1.21580 1.00444 0.94229 0.97782 0.93755 0.91996 0.92039 0.92172 0.91624 0.94182 0.92916 0.78793 0.92836 0.91556 0.91518 0.93798 0.92476 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 8.50 71.98 0.61 -3.28 16 2 C -0.09 -2.39 3.19 -10.79 -0.03 -2.42 16 3 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.10 -3.18 5.30 30.59 0.16 -3.02 16 5 C -0.13 -4.91 4.65 30.60 0.14 -4.77 16 6 C 0.23 10.23 0.54 -11.54 -0.01 10.22 16 7 O -0.57 -24.14 7.03 -148.98 -1.05 -25.19 16 8 C -0.57 -31.68 8.06 25.60 0.21 -31.48 16 9 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 10 C 0.03 1.92 5.08 84.66 0.43 2.35 16 11 N -0.92 -57.54 13.96 21.45 0.30 -57.24 16 12 Si 0.94 45.98 21.45 68.60 1.47 47.46 16 13 H -0.30 -14.40 6.20 99.48 0.62 -13.79 16 14 H -0.34 -17.46 7.11 99.48 0.71 -16.75 16 15 H -0.18 -7.74 3.96 99.48 0.39 -7.34 16 16 C -0.07 -2.61 1.79 -10.79 -0.02 -2.63 16 17 H 0.06 2.60 6.43 -2.39 -0.02 2.58 16 18 C -0.18 -7.42 6.58 71.98 0.47 -6.95 16 19 C -0.10 -3.28 4.59 30.60 0.14 -3.14 16 20 H 0.04 1.36 4.81 -2.39 -0.01 1.35 16 21 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 1.89 7.68 -2.39 -0.02 1.87 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.05 2.08 6.43 -2.39 -0.02 2.07 16 27 H 0.36 14.96 8.75 -74.06 -0.65 14.31 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.07 2.75 4.20 -2.39 -0.01 2.74 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.04 2.07 4.36 -2.39 -0.01 2.06 16 32 H 0.06 1.91 7.68 -2.39 -0.02 1.90 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -63.42 231.67 2.87 -60.55 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.04 Total: 19.53 kcal Atomic # 6 Polarization: -47.21 SS G_CDS: 2.11 Total: -45.10 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.30 Total: -57.24 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.05 Total: -25.19 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.47 Total: 47.46 kcal Total: -63.42 2.87 -60.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188047.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.707 kcal (2) G-P(sol) polarization free energy of solvation -63.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds