Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46614 * 2 1 4 4 C 1.52996 * 109.47177 * 240.00268 * 2 1 3 5 5 C 1.52997 * 109.47242 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46906 * 59.99962 * 5 4 2 7 7 H 1.08997 * 109.47035 * 60.00040 * 6 5 4 8 8 C 1.52998 * 109.46982 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46819 * 300.00030 * 6 5 4 10 10 O 1.42898 * 109.46891 * 180.02562 * 9 6 5 11 11 C 1.50699 * 109.47123 * 299.99962 * 9 6 5 12 12 H 1.08005 * 119.99948 * 96.54091 * 11 9 6 13 13 C 1.37880 * 120.00314 * 276.54326 * 11 9 6 14 14 N 1.31508 * 120.00072 * 189.70660 * 13 11 9 15 15 Si 1.86806 * 119.99732 * 9.42734 * 13 11 9 16 16 H 1.48494 * 109.47016 * 88.64337 * 15 13 11 17 17 H 1.48501 * 109.46825 * 208.64750 * 15 13 11 18 18 H 1.48504 * 109.46803 * 328.64274 * 15 13 11 19 19 C 1.52991 * 109.46951 * 60.00112 * 9 6 5 20 20 H 1.08998 * 109.46614 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47369 * 299.99916 * 1 2 3 22 22 H 1.08998 * 109.46802 * 60.00255 * 1 2 3 23 23 H 1.09006 * 109.47473 * 59.99806 * 4 2 1 24 24 H 1.08997 * 109.47107 * 299.99966 * 4 2 1 25 25 H 1.08997 * 109.47240 * 300.00128 * 5 4 2 26 26 H 1.09001 * 109.47434 * 179.97438 * 5 4 2 27 27 H 1.08999 * 109.47388 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47079 * 299.99683 * 8 6 5 29 29 H 1.09003 * 109.47748 * 59.99619 * 8 6 5 30 30 H 0.96697 * 114.00287 * 170.27988 * 10 9 6 31 31 H 0.97000 * 119.99722 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.47562 * 60.00055 * 19 9 6 33 33 H 1.09001 * 109.46980 * 179.97438 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 1 3.7176 -2.4694 -0.0001 8 6 5.6105 -1.4405 -0.0003 9 6 3.5705 -0.7203 1.2490 10 8 4.0477 -1.3933 2.4157 11 6 4.0723 0.7007 1.2487 12 1 3.4430 1.4955 0.8763 13 6 5.3348 0.9861 1.7238 14 7 5.7030 2.2358 1.9029 15 14 6.5195 -0.4027 2.1203 16 1 7.2955 -0.7539 0.9039 17 1 7.4501 0.0316 3.1930 18 1 5.7546 -1.5899 2.5794 19 6 2.0405 -0.7209 1.2492 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6767 -0.2073 -2.1393 24 1 1.6767 -1.7488 -1.2493 25 1 3.9330 0.3071 -1.2497 26 1 3.9334 -1.2348 -2.1393 27 1 5.9743 -1.9545 0.8894 28 1 5.9742 -1.9541 -0.8903 29 1 5.9732 -0.4126 -0.0003 30 1 3.8902 -0.9121 3.2395 31 1 6.5911 2.4365 2.2375 32 1 1.6775 -1.7487 1.2494 33 1 1.6772 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218188202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -33.739595 kcal Electronic energy + Delta-G solvation = -14096.955605 eV Core-core repulsion = 11930.424488 eV Total energy + Delta-G solvation = -2166.531116 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.92937 -35.06740 -32.94548 -31.99126 -29.04690 -28.13451 -25.08137 -23.78684 -21.42573 -19.81142 -18.58718 -16.80847 -15.55267 -14.62223 -14.32939 -14.26071 -13.63576 -13.00417 -12.72798 -12.33985 -12.19650 -12.03616 -11.70723 -11.48318 -10.95921 -10.73147 -10.44348 -10.10081 -10.04974 -9.83870 -9.58901 -9.40449 -8.85115 -8.64613 -8.21595 -7.46045 -6.04914 -4.11712 3.46074 3.67259 3.80379 4.57081 5.23174 5.31902 5.43464 5.57231 5.71754 5.80515 6.03032 6.12425 6.20292 6.28370 6.31129 6.36684 6.44770 6.48779 6.51511 6.65016 6.72015 6.80016 6.94752 7.01207 7.11006 7.23111 7.26428 7.52254 7.76628 8.32130 8.89410 9.05768 9.59992 11.04160 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042193 B = 0.016134 C = 0.014954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.460939 B = 1735.100752 C = 1871.978768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.106 4.106 5 C -0.103 4.103 6 C -0.064 4.064 7 H 0.043 0.957 8 C -0.171 4.171 9 C 0.215 3.785 10 O -0.571 6.571 11 C -0.546 4.546 12 H 0.077 0.923 13 C 0.068 3.932 14 N -0.895 5.895 15 Si 0.871 3.129 16 H -0.291 1.291 17 H -0.333 1.333 18 H -0.181 1.181 19 C -0.116 4.116 20 H 0.045 0.955 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.363 0.637 31 H 0.262 0.738 32 H 0.039 0.961 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -6.197 -3.356 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.082 4.082 7 H 0.061 0.939 8 C -0.227 4.227 9 C 0.176 3.824 10 O -0.379 6.379 11 C -0.583 4.583 12 H 0.095 0.905 13 C -0.135 4.135 14 N -0.532 5.532 15 Si 0.706 3.294 16 H -0.219 1.219 17 H -0.265 1.265 18 H -0.106 1.106 19 C -0.154 4.154 20 H 0.064 0.936 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.211 0.789 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.394 -6.512 -3.765 9.256 hybrid contribution 0.537 0.037 0.441 0.696 sum -4.857 -6.475 -3.324 8.750 Atomic orbital electron populations 1.21858 0.96903 1.00670 1.00769 1.21077 0.93364 1.01239 0.94885 0.89932 1.21518 0.96405 0.99309 0.97169 1.21450 0.94497 1.02178 0.95929 1.21000 0.94824 0.97013 0.95409 0.93891 1.22541 0.96766 1.03008 1.00399 1.19182 0.88831 0.91670 0.82748 1.86834 1.81287 1.52398 1.17369 1.21385 1.01112 0.91725 1.44102 0.90530 1.25223 0.98476 0.95995 0.93798 1.69997 1.19931 1.18773 1.44481 0.88383 0.79304 0.85820 0.75911 1.21950 1.26478 1.10597 1.22038 0.98486 0.97924 0.96963 0.93590 0.93189 0.93533 0.93184 0.93303 0.90301 0.93744 0.92338 0.94129 0.90119 0.78940 0.92838 0.94185 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.20 37.16 0.34 -1.84 16 2 C -0.09 -1.59 2.50 -90.62 -0.23 -1.82 16 3 H 0.08 1.71 6.30 -51.93 -0.33 1.38 16 4 C -0.11 -1.83 5.20 -26.73 -0.14 -1.97 16 5 C -0.10 -1.99 4.98 -26.73 -0.13 -2.12 16 6 C -0.06 -1.35 2.24 -90.61 -0.20 -1.55 16 7 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.17 -3.79 6.08 37.16 0.23 -3.57 16 9 C 0.21 4.86 0.74 -91.77 -0.07 4.79 16 10 O -0.57 -12.86 8.03 -35.23 -0.28 -13.14 16 11 C -0.55 -14.41 6.73 -34.44 -0.23 -14.65 16 12 H 0.08 2.21 6.34 -52.48 -0.33 1.87 16 13 C 0.07 1.89 4.93 -17.82 -0.09 1.80 16 14 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 15 Si 0.87 21.62 20.95 -169.99 -3.56 18.06 16 16 H -0.29 -7.15 5.42 56.52 0.31 -6.85 16 17 H -0.33 -8.74 7.11 56.52 0.40 -8.34 16 18 H -0.18 -4.24 4.16 75.77 0.32 -3.93 16 19 C -0.12 -2.31 4.37 -26.74 -0.12 -2.43 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.71 7.22 -51.93 -0.37 1.33 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.32 4.11 -51.93 -0.21 1.11 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.99 4.28 -51.93 -0.22 1.76 16 30 H 0.36 7.53 8.60 66.19 0.57 8.09 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 233.16 15.07 3.51 3.51 Total: -1.00 -29.24 233.16 -4.64 -33.88 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.45 Total: 7.26 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.64 Total: -23.35 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.23 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.28 Total: -13.14 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.56 Total: 18.06 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.24 -4.64 -33.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.143 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds