Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46614 * 2 1 4 4 C 1.52996 * 109.47177 * 240.00268 * 2 1 3 5 5 C 1.52997 * 109.47242 * 179.97438 * 4 2 1 6 6 C 1.53009 * 109.46906 * 59.99962 * 5 4 2 7 7 H 1.08997 * 109.47035 * 60.00040 * 6 5 4 8 8 C 1.52998 * 109.46982 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46819 * 300.00030 * 6 5 4 10 10 O 1.42898 * 109.46891 * 180.02562 * 9 6 5 11 11 C 1.50699 * 109.47123 * 299.99962 * 9 6 5 12 12 H 1.08005 * 119.99948 * 96.54091 * 11 9 6 13 13 C 1.37880 * 120.00314 * 276.54326 * 11 9 6 14 14 N 1.31508 * 120.00072 * 189.70660 * 13 11 9 15 15 Si 1.86806 * 119.99732 * 9.42734 * 13 11 9 16 16 H 1.48494 * 109.47016 * 88.64337 * 15 13 11 17 17 H 1.48501 * 109.46825 * 208.64750 * 15 13 11 18 18 H 1.48504 * 109.46803 * 328.64274 * 15 13 11 19 19 C 1.52991 * 109.46951 * 60.00112 * 9 6 5 20 20 H 1.08998 * 109.46614 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47369 * 299.99916 * 1 2 3 22 22 H 1.08998 * 109.46802 * 60.00255 * 1 2 3 23 23 H 1.09006 * 109.47473 * 59.99806 * 4 2 1 24 24 H 1.08997 * 109.47107 * 299.99966 * 4 2 1 25 25 H 1.08997 * 109.47240 * 300.00128 * 5 4 2 26 26 H 1.09001 * 109.47434 * 179.97438 * 5 4 2 27 27 H 1.08999 * 109.47388 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47079 * 299.99683 * 8 6 5 29 29 H 1.09003 * 109.47748 * 59.99619 * 8 6 5 30 30 H 0.96697 * 114.00287 * 170.27988 * 10 9 6 31 31 H 0.97000 * 119.99722 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.47562 * 60.00055 * 19 9 6 33 33 H 1.09001 * 109.46980 * 179.97438 * 19 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 1 3.7176 -2.4694 -0.0001 8 6 5.6105 -1.4405 -0.0003 9 6 3.5705 -0.7203 1.2490 10 8 4.0477 -1.3933 2.4157 11 6 4.0723 0.7007 1.2487 12 1 3.4430 1.4955 0.8763 13 6 5.3348 0.9861 1.7238 14 7 5.7030 2.2358 1.9029 15 14 6.5195 -0.4027 2.1203 16 1 7.2955 -0.7539 0.9039 17 1 7.4501 0.0316 3.1930 18 1 5.7546 -1.5899 2.5794 19 6 2.0405 -0.7209 1.2492 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6767 -0.2073 -2.1393 24 1 1.6767 -1.7488 -1.2493 25 1 3.9330 0.3071 -1.2497 26 1 3.9334 -1.2348 -2.1393 27 1 5.9743 -1.9545 0.8894 28 1 5.9742 -1.9541 -0.8903 29 1 5.9732 -0.4126 -0.0003 30 1 3.8902 -0.9121 3.2395 31 1 6.5911 2.4365 2.2375 32 1 1.6775 -1.7487 1.2494 33 1 1.6772 -0.2074 2.1394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218188202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -54.610414 kcal Electronic energy + Delta-G solvation = -14097.860631 eV Core-core repulsion = 11930.424488 eV Total energy + Delta-G solvation = -2167.436143 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60632 -36.71363 -34.64947 -34.03539 -30.68326 -29.68014 -27.09542 -25.29801 -23.05264 -21.32947 -20.43453 -18.69039 -17.41841 -16.43893 -16.16155 -15.87792 -15.20350 -14.62260 -14.47405 -14.10872 -13.98202 -13.50621 -13.35177 -12.99697 -12.51867 -12.35196 -12.06118 -11.98152 -11.70753 -11.46198 -11.29741 -11.04532 -10.72277 -10.51548 -10.18193 -9.30652 -8.23962 -6.31678 1.46199 1.62869 1.80925 2.49483 3.12404 3.70191 3.98984 4.05066 4.21901 4.30867 4.46526 4.69310 4.75532 4.80458 4.83756 4.84129 4.90763 4.97565 5.10059 5.16299 5.18553 5.22343 5.33684 5.45853 5.57075 5.57923 5.68393 5.81889 5.87904 6.20829 6.75675 7.16685 7.45838 8.88487 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042193 B = 0.016134 C = 0.014954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.460939 B = 1735.100752 C = 1871.978768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.044 0.956 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.066 4.066 7 H 0.066 0.934 8 C -0.174 4.174 9 C 0.210 3.790 10 O -0.573 6.573 11 C -0.528 4.528 12 H 0.040 0.960 13 C 0.015 3.985 14 N -0.949 5.949 15 Si 0.923 3.077 16 H -0.287 1.287 17 H -0.357 1.357 18 H -0.148 1.148 19 C -0.113 4.113 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.370 0.630 31 H 0.258 0.742 32 H 0.061 0.939 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -8.944 -4.288 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.063 0.937 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.085 4.085 7 H 0.084 0.916 8 C -0.231 4.231 9 C 0.171 3.829 10 O -0.382 6.382 11 C -0.566 4.566 12 H 0.058 0.942 13 C -0.182 4.182 14 N -0.589 5.589 15 Si 0.757 3.243 16 H -0.215 1.215 17 H -0.291 1.291 18 H -0.072 1.072 19 C -0.151 4.151 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.768 -9.278 -4.711 12.413 hybrid contribution 0.890 0.958 0.696 1.481 sum -5.878 -8.320 -4.014 10.950 Atomic orbital electron populations 1.21780 0.94060 1.02124 1.01515 1.21044 0.95786 0.99005 0.94931 0.93726 1.21510 0.94577 1.00707 0.97146 1.21430 0.96307 1.00051 0.96209 1.21053 0.94235 0.98125 0.95063 0.91609 1.22495 0.97603 1.01218 1.01747 1.19273 0.90790 0.89332 0.83543 1.86733 1.81524 1.52253 1.17718 1.21618 0.99992 0.93345 1.41595 0.94199 1.25981 1.00263 0.97646 0.94289 1.70140 1.20247 1.21063 1.47403 0.87702 0.77172 0.84433 0.74992 1.21492 1.29095 1.07168 1.21967 0.96256 0.99278 0.97566 0.91666 0.93387 0.92042 0.91338 0.90924 0.93951 0.91120 0.92572 0.91249 0.93357 0.78101 0.93332 0.92015 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.20 71.98 0.66 -3.05 16 2 C -0.09 -3.08 2.50 -10.79 -0.03 -3.11 16 3 H 0.04 1.87 6.30 -2.39 -0.02 1.86 16 4 C -0.10 -3.14 5.20 30.59 0.16 -2.99 16 5 C -0.10 -3.70 4.98 30.60 0.15 -3.55 16 6 C -0.07 -2.61 2.24 -10.79 -0.02 -2.63 16 7 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 8 C -0.17 -7.30 6.08 71.98 0.44 -6.86 16 9 C 0.21 9.14 0.74 -11.54 -0.01 9.14 16 10 O -0.57 -24.38 8.03 -148.98 -1.20 -25.58 16 11 C -0.53 -28.42 6.73 25.60 0.17 -28.25 16 12 H 0.04 2.41 6.34 -2.91 -0.02 2.39 16 13 C 0.01 0.86 4.93 84.66 0.42 1.27 16 14 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 15 Si 0.92 45.04 20.95 68.60 1.44 46.48 16 16 H -0.29 -13.69 5.42 99.48 0.54 -13.15 16 17 H -0.36 -18.73 7.11 99.48 0.71 -18.03 16 18 H -0.15 -6.48 4.16 111.67 0.46 -6.01 16 19 C -0.11 -4.24 4.37 30.59 0.13 -4.11 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.82 7.22 -2.39 -0.02 1.81 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 2.36 4.11 -2.39 -0.01 2.35 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.05 2.33 4.28 -2.39 -0.01 2.32 16 30 H 0.37 14.69 8.60 -40.15 -0.35 14.34 16 31 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -64.17 233.16 2.95 -61.22 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.33 Total: 21.46 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 2.08 Total: -44.12 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.20 Total: -25.58 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.44 Total: 46.48 kcal Total: -64.17 2.95 -61.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.612 kcal (2) G-P(sol) polarization free energy of solvation -64.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds