Wall clock time and date at job start Mon Mar 30 2020 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47116 * 2 1 4 4 C 1.52999 * 109.47120 * 240.00513 * 2 1 3 5 5 C 1.53008 * 109.46862 * 300.00001 * 4 2 1 6 6 C 1.52996 * 109.47094 * 300.00111 * 5 4 2 7 7 H 1.09005 * 109.47247 * 300.00025 * 6 5 4 8 8 C 1.52998 * 109.47172 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47229 * 59.99906 * 6 5 4 10 10 O 1.42898 * 109.46807 * 59.99898 * 9 6 5 11 11 C 1.50694 * 109.46940 * 180.02562 * 9 6 5 12 12 H 1.07995 * 120.00703 * 0.86221 * 11 9 6 13 13 C 1.37881 * 119.99719 * 180.86057 * 11 9 6 14 14 N 1.31518 * 120.00169 * 5.72573 * 13 11 9 15 15 Si 1.86805 * 120.00108 * 185.72297 * 13 11 9 16 16 H 1.48492 * 109.47279 * 84.98788 * 15 13 11 17 17 H 1.48495 * 109.47071 * 204.99226 * 15 13 11 18 18 H 1.48504 * 109.46905 * 324.99023 * 15 13 11 19 19 C 1.52996 * 109.47046 * 120.00274 * 2 1 3 20 20 H 1.08996 * 109.47125 * 288.73459 * 1 2 3 21 21 H 1.09006 * 109.46618 * 48.72813 * 1 2 3 22 22 H 1.08991 * 109.47104 * 168.72691 * 1 2 3 23 23 H 1.08997 * 109.46833 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47569 * 59.99790 * 4 2 1 25 25 H 1.08998 * 109.46652 * 180.02562 * 5 4 2 26 26 H 1.09005 * 109.47095 * 60.00229 * 5 4 2 27 27 H 1.08992 * 109.47348 * 300.00027 * 8 6 5 28 28 H 1.09004 * 109.46954 * 60.00078 * 8 6 5 29 29 H 1.09001 * 109.47442 * 179.97438 * 8 6 5 30 30 H 0.96706 * 113.99728 * 179.97438 * 10 9 6 31 31 H 0.96998 * 119.99742 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47117 * 299.99988 * 19 2 1 33 33 H 1.09001 * 109.46783 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 1 3.1300 -2.8850 -0.0002 8 6 1.5294 -4.3273 0.0001 9 6 1.5300 -2.1638 1.2491 10 8 0.1010 -2.1637 1.2491 11 6 2.0328 -2.8739 2.4795 12 1 2.6654 -3.7435 2.3805 13 6 1.6853 -2.4132 3.7317 14 7 0.8260 -1.4251 3.8538 15 14 2.4348 -3.1927 5.2550 16 1 3.7464 -2.5581 5.5414 17 1 1.5252 -2.9933 6.4116 18 1 2.6287 -4.6466 5.0226 19 6 2.0400 -0.7213 1.2492 20 1 -0.3633 0.3301 0.9732 21 1 -0.3633 0.6779 -0.7724 22 1 -0.3633 -1.0078 -0.2009 23 1 3.1300 -0.7215 -1.2490 24 1 1.6767 -0.2073 -2.1393 25 1 1.8937 -2.6775 -2.1392 26 1 0.4399 -2.1637 -1.2494 27 1 0.4395 -4.3269 0.0003 28 1 1.8924 -4.8413 -0.8900 29 1 1.8931 -4.8413 0.8898 30 1 -0.2923 -1.7224 2.0144 31 1 0.5813 -1.1013 4.7348 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7217 1.2489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218188330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:10 Heat of formation + Delta-G solvation = -75.762803 kcal Electronic energy + Delta-G solvation = -14094.014742 eV Core-core repulsion = 11925.661363 eV Total energy + Delta-G solvation = -2168.353379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.77114 -34.07408 -32.43892 -31.94903 -28.84059 -27.14097 -24.95719 -23.92673 -21.18513 -19.48556 -17.88135 -16.78803 -15.09519 -14.57564 -13.92254 -13.74719 -12.99459 -12.84622 -12.60540 -12.08569 -11.85371 -11.40877 -11.07995 -11.01539 -10.94054 -10.60170 -10.29173 -10.13706 -9.99695 -9.93424 -9.62701 -9.59067 -9.32310 -8.64683 -8.42601 -7.58575 -6.09096 -4.16866 3.26658 3.33630 3.36768 4.37657 5.15772 5.62624 5.65521 5.74739 6.11857 6.15227 6.25855 6.33761 6.43008 6.48237 6.55203 6.65836 6.69144 6.77748 6.87944 6.93983 7.05956 7.13034 7.21734 7.32130 7.36969 7.56367 7.72678 7.84220 8.08491 8.32768 8.84775 9.50250 9.76001 10.94326 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.014729 C = 0.012727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.912263 B = 1900.552657 C = 2199.439515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.041 0.959 4 C -0.109 4.109 5 C -0.111 4.111 6 C -0.071 4.071 7 H 0.057 0.943 8 C -0.129 4.129 9 C 0.262 3.738 10 O -0.584 6.584 11 C -0.530 4.530 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.130 4.130 20 H 0.047 0.953 21 H 0.018 0.982 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.379 0.621 31 H 0.265 0.735 32 H 0.084 0.916 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 0.745 -5.681 5.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.059 0.941 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.089 4.089 7 H 0.075 0.925 8 C -0.186 4.186 9 C 0.223 3.777 10 O -0.395 6.395 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.132 4.132 14 N -0.540 5.540 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.169 4.169 20 H 0.066 0.934 21 H 0.037 0.963 22 H 0.113 0.887 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.784 0.526 -6.099 6.171 hybrid contribution 0.510 0.064 1.505 1.590 sum 1.294 0.591 -4.594 4.809 Atomic orbital electron populations 1.22152 0.95424 1.03273 0.99590 1.21077 0.96409 0.97209 0.95947 0.94054 1.21519 0.99404 0.96378 0.97357 1.21599 1.01507 0.94748 0.97025 1.21035 0.98361 0.94827 0.94710 0.92482 1.21626 1.01378 0.96181 0.99393 1.18449 0.79228 0.89609 0.90447 1.86063 1.21447 1.82393 1.49556 1.21831 1.30570 1.13152 0.91229 0.92327 1.24972 0.94574 0.94629 0.99022 1.69523 1.33059 1.27457 1.23999 0.86587 0.79063 0.79760 0.82418 1.20669 1.21295 1.20000 1.22192 0.98536 0.99580 0.96555 0.93350 0.96312 0.88741 0.93271 0.93747 0.94234 0.91240 0.92690 0.95628 0.92436 0.76860 0.92478 0.89773 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 7.79 37.16 0.29 -2.61 16 2 C -0.09 -1.76 3.19 -90.62 -0.29 -2.05 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.98 5.45 -26.73 -0.15 -2.12 16 5 C -0.11 -2.11 4.87 -26.73 -0.13 -2.24 16 6 C -0.07 -1.51 2.04 -90.62 -0.18 -1.70 16 7 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.13 -2.62 8.79 37.16 0.33 -2.30 16 9 C 0.26 6.30 0.35 -91.77 -0.03 6.27 16 10 O -0.58 -14.39 8.15 -35.23 -0.29 -14.68 16 11 C -0.53 -14.05 7.49 -34.44 -0.26 -14.31 16 12 H 0.06 1.57 6.75 -52.49 -0.35 1.21 16 13 C 0.07 1.82 5.20 -17.82 -0.09 1.72 16 14 N -0.90 -23.93 9.75 55.43 0.54 -23.39 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.13 -3.03 4.34 -26.73 -0.12 -3.15 16 20 H 0.05 0.99 7.90 -51.93 -0.41 0.58 16 21 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 22 H 0.09 1.97 3.79 -51.93 -0.20 1.77 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.37 5.94 -51.93 -0.31 1.06 16 27 H 0.05 1.16 7.68 -51.93 -0.40 0.76 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.23 6.64 -51.93 -0.34 0.89 16 30 H 0.38 9.88 6.62 45.56 0.30 10.18 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.08 2.16 6.37 -51.93 -0.33 1.82 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -25.93 243.42 -6.29 -32.22 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.56 Total: 8.82 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -0.63 Total: -22.48 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.54 Total: -23.39 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.29 Total: -14.68 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -25.93 -6.29 -32.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.544 kcal (2) G-P(sol) polarization free energy of solvation -25.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds