Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47116 * 2 1 4 4 C 1.52999 * 109.47120 * 240.00513 * 2 1 3 5 5 C 1.53008 * 109.46862 * 300.00001 * 4 2 1 6 6 C 1.52996 * 109.47094 * 300.00111 * 5 4 2 7 7 H 1.09005 * 109.47247 * 300.00025 * 6 5 4 8 8 C 1.52998 * 109.47172 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47229 * 59.99906 * 6 5 4 10 10 O 1.42898 * 109.46807 * 59.99898 * 9 6 5 11 11 C 1.50694 * 109.46940 * 180.02562 * 9 6 5 12 12 H 1.07995 * 120.00703 * 0.86221 * 11 9 6 13 13 C 1.37881 * 119.99719 * 180.86057 * 11 9 6 14 14 N 1.31518 * 120.00169 * 5.72573 * 13 11 9 15 15 Si 1.86805 * 120.00108 * 185.72297 * 13 11 9 16 16 H 1.48492 * 109.47279 * 84.98788 * 15 13 11 17 17 H 1.48495 * 109.47071 * 204.99226 * 15 13 11 18 18 H 1.48504 * 109.46905 * 324.99023 * 15 13 11 19 19 C 1.52996 * 109.47046 * 120.00274 * 2 1 3 20 20 H 1.08996 * 109.47125 * 288.73459 * 1 2 3 21 21 H 1.09006 * 109.46618 * 48.72813 * 1 2 3 22 22 H 1.08991 * 109.47104 * 168.72691 * 1 2 3 23 23 H 1.08997 * 109.46833 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47569 * 59.99790 * 4 2 1 25 25 H 1.08998 * 109.46652 * 180.02562 * 5 4 2 26 26 H 1.09005 * 109.47095 * 60.00229 * 5 4 2 27 27 H 1.08992 * 109.47348 * 300.00027 * 8 6 5 28 28 H 1.09004 * 109.46954 * 60.00078 * 8 6 5 29 29 H 1.09001 * 109.47442 * 179.97438 * 8 6 5 30 30 H 0.96706 * 113.99728 * 179.97438 * 10 9 6 31 31 H 0.96998 * 119.99742 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47117 * 299.99988 * 19 2 1 33 33 H 1.09001 * 109.46783 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 1 3.1300 -2.8850 -0.0002 8 6 1.5294 -4.3273 0.0001 9 6 1.5300 -2.1638 1.2491 10 8 0.1010 -2.1637 1.2491 11 6 2.0328 -2.8739 2.4795 12 1 2.6654 -3.7435 2.3805 13 6 1.6853 -2.4132 3.7317 14 7 0.8260 -1.4251 3.8538 15 14 2.4348 -3.1927 5.2550 16 1 3.7464 -2.5581 5.5414 17 1 1.5252 -2.9933 6.4116 18 1 2.6287 -4.6466 5.0226 19 6 2.0400 -0.7213 1.2492 20 1 -0.3633 0.3301 0.9732 21 1 -0.3633 0.6779 -0.7724 22 1 -0.3633 -1.0078 -0.2009 23 1 3.1300 -0.7215 -1.2490 24 1 1.6767 -0.2073 -2.1393 25 1 1.8937 -2.6775 -2.1392 26 1 0.4399 -2.1637 -1.2494 27 1 0.4395 -4.3269 0.0003 28 1 1.8924 -4.8413 -0.8900 29 1 1.8931 -4.8413 0.8898 30 1 -0.2923 -1.7224 2.0144 31 1 0.5813 -1.1013 4.7348 32 1 1.6767 -0.2075 2.1392 33 1 3.1300 -0.7217 1.2489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218188330.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = -90.448293 kcal Electronic energy + Delta-G solvation = -14094.651553 eV Core-core repulsion = 11925.661363 eV Total energy + Delta-G solvation = -2168.990190 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.49241 -35.87561 -34.10132 -33.95917 -30.61308 -28.77476 -26.90070 -25.52873 -22.92675 -21.17932 -19.59249 -18.72001 -17.02115 -16.29470 -15.78103 -15.43775 -14.60846 -14.57389 -14.27132 -13.92649 -13.45731 -13.23674 -12.83366 -12.80375 -12.56580 -12.39975 -12.16761 -11.89196 -11.75963 -11.62423 -11.31662 -11.22314 -10.98863 -10.48435 -10.33630 -9.47755 -8.09609 -6.24478 1.39197 1.41774 1.49463 2.42151 3.11754 4.06275 4.09908 4.20491 4.40578 4.52521 4.60658 4.74255 4.82877 4.94464 4.99803 5.04030 5.12692 5.19433 5.25024 5.28310 5.47098 5.48591 5.54143 5.59455 5.64072 5.75110 5.93936 6.03419 6.18211 6.36409 6.81360 7.45294 7.72172 8.90501 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.014729 C = 0.012727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.912263 B = 1900.552657 C = 2199.439515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.053 0.947 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.075 4.075 7 H 0.055 0.945 8 C -0.122 4.122 9 C 0.254 3.746 10 O -0.583 6.583 11 C -0.552 4.552 12 H 0.049 0.951 13 C 0.028 3.972 14 N -0.912 5.912 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.275 1.275 19 C -0.126 4.126 20 H 0.027 0.973 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.370 0.630 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 0.791 -7.024 7.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.071 0.929 4 C -0.143 4.143 5 C -0.144 4.144 6 C -0.094 4.094 7 H 0.073 0.927 8 C -0.179 4.179 9 C 0.215 3.785 10 O -0.392 6.392 11 C -0.590 4.590 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.554 5.554 15 Si 0.774 3.226 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.164 4.164 20 H 0.046 0.954 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.220 0.780 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.187 0.569 -7.453 7.568 hybrid contribution 0.386 0.045 1.936 1.975 sum 1.573 0.614 -5.517 5.769 Atomic orbital electron populations 1.22024 0.95202 1.03110 0.99340 1.21074 0.96542 0.97689 0.95332 0.92894 1.21504 0.99865 0.95743 0.97161 1.21551 1.00937 0.95294 0.96577 1.21053 0.98175 0.95336 0.94788 0.92703 1.21547 1.00482 0.95902 1.00010 1.18597 0.78713 0.90159 0.91058 1.86079 1.21972 1.82309 1.48818 1.22143 1.30808 1.13256 0.92801 0.93301 1.25591 0.95014 0.95193 1.01305 1.69621 1.33439 1.27970 1.24341 0.85747 0.78370 0.78858 0.79623 1.20390 1.20973 1.20036 1.22055 0.97749 0.99391 0.97231 0.95363 0.93614 0.89915 0.92565 0.90913 0.91463 0.92090 0.93886 0.92427 0.94383 0.77974 0.92526 0.92803 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 7.79 71.98 0.56 -4.74 16 2 C -0.09 -3.36 3.19 -10.79 -0.03 -3.39 16 3 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.11 -3.47 5.45 30.60 0.17 -3.30 16 5 C -0.11 -3.71 4.87 30.60 0.15 -3.56 16 6 C -0.07 -3.10 2.04 -10.79 -0.02 -3.13 16 7 H 0.05 2.27 8.14 -2.38 -0.02 2.26 16 8 C -0.12 -4.84 8.79 71.98 0.63 -4.20 16 9 C 0.25 12.22 0.35 -11.54 0.00 12.22 16 10 O -0.58 -28.96 8.15 -148.98 -1.21 -30.17 16 11 C -0.55 -29.64 7.49 25.60 0.19 -29.44 16 12 H 0.05 2.65 6.75 -2.91 -0.02 2.63 16 13 C 0.03 1.50 5.20 84.66 0.44 1.94 16 14 N -0.91 -49.34 9.75 21.45 0.21 -49.13 16 15 Si 0.95 43.10 29.54 68.60 2.03 45.13 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 C -0.13 -5.86 4.34 30.59 0.13 -5.73 16 20 H 0.03 1.14 7.90 -2.39 -0.02 1.12 16 21 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 22 H 0.08 3.34 3.79 -2.39 -0.01 3.34 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.06 2.25 5.94 -2.38 -0.01 2.23 16 27 H 0.04 1.77 7.68 -2.39 -0.02 1.75 16 28 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.04 1.61 6.64 -2.39 -0.02 1.60 16 30 H 0.37 19.72 6.62 -74.05 -0.49 19.23 16 31 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.05 2.81 6.37 -2.38 -0.02 2.79 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -54.63 243.42 3.83 -50.80 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.59 Total: 26.72 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 2.21 Total: -43.34 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.21 Total: -49.13 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.21 Total: -30.17 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -54.63 3.83 -50.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188330.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.650 kcal (2) G-P(sol) polarization free energy of solvation -54.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds