Wall clock time and date at job start Mon Mar 30 2020 02:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00257 * 2 1 3 5 5 C 1.52997 * 109.47415 * 300.00127 * 4 2 1 6 6 C 1.53006 * 109.47164 * 300.00027 * 5 4 2 7 7 C 1.52999 * 109.46626 * 59.99702 * 6 5 4 8 8 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 9 9 C 1.53006 * 109.47000 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.46866 * 60.00185 * 9 7 6 11 11 O 1.42897 * 109.47261 * 180.02562 * 9 7 6 12 12 C 1.50701 * 109.46989 * 300.00425 * 9 7 6 13 13 H 1.07998 * 120.00099 * 0.02562 * 12 9 7 14 14 C 1.37880 * 119.99755 * 179.97438 * 12 9 7 15 15 N 1.31515 * 120.00246 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47341 * 59.99963 * 16 14 12 18 18 H 1.48496 * 109.46873 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47134 * 299.99873 * 16 14 12 20 20 C 1.52996 * 109.47131 * 120.00621 * 2 1 3 21 21 H 1.09001 * 109.47502 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99883 * 1 2 3 23 23 H 1.09002 * 109.47153 * 59.99513 * 1 2 3 24 24 H 1.09000 * 109.46986 * 180.02562 * 4 2 1 25 25 H 1.09001 * 109.47601 * 60.00732 * 4 2 1 26 26 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47140 * 59.99976 * 5 4 2 28 28 H 1.08993 * 109.46955 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47050 * 300.00004 * 6 5 4 30 30 H 0.96690 * 114.00280 * 60.00015 * 11 9 7 31 31 H 0.96991 * 120.00061 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.47054 * 179.97438 * 20 2 1 33 33 H 1.09001 * 109.46997 * 299.99574 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8851 -0.0002 7 6 1.5299 -2.1638 1.2490 8 1 0.4399 -2.1638 1.2490 9 6 2.0404 -2.8848 2.4983 10 1 3.1305 -2.8844 2.4980 11 8 1.5637 -2.2116 3.6651 12 6 1.5386 -4.3058 2.4985 13 1 0.9180 -4.6594 1.6884 14 6 1.8726 -5.1547 3.5323 15 7 2.6296 -4.7245 4.5180 16 14 1.2500 -6.9159 3.5329 17 1 1.7439 -7.6161 2.3200 18 1 1.7456 -7.6156 4.7453 19 1 -0.2350 -6.9159 3.5343 20 6 2.0400 -0.7214 1.2491 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 3.1299 -0.7216 -1.2491 25 1 1.6767 -0.2073 -2.1393 26 1 1.8936 -2.6775 -2.1393 27 1 0.4399 -2.1637 -1.2494 28 1 1.6769 -3.9128 -0.0006 29 1 3.1299 -2.8851 -0.0003 30 1 0.5998 -2.1740 3.7312 31 1 2.8642 -5.3216 5.2455 32 1 3.1300 -0.7218 1.2489 33 1 1.6767 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218188609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:54 Heat of formation + Delta-G solvation = -87.789211 kcal Electronic energy + Delta-G solvation = -13440.159048 eV Core-core repulsion = 11271.284164 eV Total energy + Delta-G solvation = -2168.874884 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.78587 -35.31804 -32.09504 -31.49222 -30.30016 -26.63386 -25.99918 -22.89843 -21.62387 -20.02638 -18.13115 -16.74115 -15.36223 -14.53863 -14.41041 -14.07660 -13.49047 -13.34217 -12.92898 -12.43384 -12.03264 -11.77288 -11.47699 -11.11994 -11.09138 -10.87807 -10.64443 -10.49886 -10.40555 -10.02636 -9.92857 -9.46233 -9.41632 -8.71628 -8.48761 -7.92648 -5.93490 -4.10237 3.31723 3.37179 3.38824 4.43760 5.15555 5.18931 5.24974 5.33335 5.68565 5.78323 5.79831 5.94602 6.03286 6.11159 6.18591 6.22175 6.29804 6.33781 6.45378 6.57260 6.65089 6.71368 6.76408 6.93670 7.09657 7.16059 7.22418 7.84005 7.96251 8.29443 8.92562 9.46990 9.66694 11.10731 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050095 B = 0.010325 C = 0.009385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.807574 B = 2711.166630 C = 2982.769008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.109 4.109 8 H 0.058 0.942 9 C 0.232 3.768 10 H 0.052 0.948 11 O -0.567 6.567 12 C -0.565 4.565 13 H 0.056 0.944 14 C 0.077 3.923 15 N -0.862 5.862 16 Si 0.885 3.115 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.105 4.105 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.343 0.657 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 6.294 -8.873 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.076 0.924 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.140 4.140 7 C -0.127 4.127 8 H 0.077 0.923 9 C 0.175 3.825 10 H 0.069 0.931 11 O -0.369 6.369 12 C -0.603 4.603 13 H 0.074 0.926 14 C -0.128 4.128 15 N -0.499 5.499 16 Si 0.713 3.287 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.142 4.142 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.186 0.814 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.055 6.316 -8.588 10.857 hybrid contribution -0.862 -1.155 -0.120 1.446 sum -2.917 5.161 -8.708 10.534 Atomic orbital electron populations 1.21912 0.95846 1.02223 1.00485 1.21116 0.95654 0.98367 0.95928 0.92443 1.21538 1.00212 0.96174 0.96943 1.21626 1.00545 0.95304 0.98410 1.21427 1.00086 0.99542 0.92970 1.21877 0.99679 0.93621 0.97572 0.92347 1.19403 0.94822 0.88810 0.79488 0.93068 1.86546 1.23434 1.79714 1.47217 1.21694 1.33804 0.97061 1.07743 0.92586 1.25063 0.94346 0.98010 0.95427 1.70068 1.34836 1.35223 1.09735 0.86803 0.79291 0.85281 0.77367 1.20236 1.21313 1.20247 1.21558 0.99924 0.96669 0.96074 0.91743 0.93111 0.93802 0.92476 0.93169 0.93141 0.92306 0.91188 0.92928 0.81405 0.93097 0.92919 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.50 37.16 0.32 -1.72 16 2 C -0.09 -1.36 3.20 -90.62 -0.29 -1.65 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.56 5.45 -26.73 -0.15 -1.71 16 5 C -0.12 -1.85 5.65 -26.73 -0.15 -2.00 16 6 C -0.10 -1.92 4.95 -26.73 -0.13 -2.05 16 7 C -0.11 -2.19 1.65 -90.62 -0.15 -2.34 16 8 H 0.06 1.18 6.43 -51.93 -0.33 0.84 16 9 C 0.23 5.87 2.41 -27.88 -0.07 5.81 16 10 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 11 O -0.57 -14.73 12.06 -35.23 -0.42 -15.15 16 12 C -0.57 -15.43 8.03 -34.44 -0.28 -15.70 16 13 H 0.06 1.49 6.71 -52.49 -0.35 1.14 16 14 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 15 N -0.86 -25.85 12.84 55.43 0.71 -25.14 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C -0.10 -1.88 4.58 -26.73 -0.12 -2.00 16 21 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.88 6.43 -51.93 -0.33 0.54 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.34 7.94 9.04 45.56 0.41 8.35 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 254.87 15.07 3.84 3.84 Total: -1.00 -29.53 254.87 -6.55 -36.08 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.54 Total: 5.33 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -1.11 Total: -21.29 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.71 Total: -25.14 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.42 Total: -15.15 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.53 -6.55 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.711 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds