Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47123 * 2 1 4 4 C 1.52999 * 109.46708 * 240.00227 * 2 1 3 5 5 C 1.53001 * 109.47187 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47280 * 59.99567 * 5 4 2 7 7 C 1.52998 * 109.47005 * 300.00735 * 6 5 4 8 8 H 1.09008 * 109.46877 * 299.99472 * 7 6 5 9 9 C 1.53002 * 109.47005 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47070 * 184.99640 * 9 7 6 11 11 O 1.42903 * 109.46923 * 304.99805 * 9 7 6 12 12 C 1.50701 * 109.47419 * 64.99566 * 9 7 6 13 13 H 1.07999 * 119.99742 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00221 * 180.02562 * 12 9 7 15 15 N 1.31509 * 120.00392 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 119.99966 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.47157 * 90.00092 * 16 14 12 18 18 H 1.48496 * 109.47225 * 210.00367 * 16 14 12 19 19 H 1.48502 * 109.47022 * 330.00490 * 16 14 12 20 20 C 1.52989 * 109.47186 * 120.00459 * 2 1 3 21 21 H 1.08997 * 109.46584 * 300.00262 * 1 2 3 22 22 H 1.09001 * 109.46897 * 59.99644 * 1 2 3 23 23 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47143 * 299.99760 * 4 2 1 25 25 H 1.09001 * 109.47387 * 59.99843 * 4 2 1 26 26 H 1.08997 * 109.47507 * 179.97438 * 5 4 2 27 27 H 1.09008 * 109.46996 * 299.99853 * 5 4 2 28 28 H 1.08997 * 109.47298 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46432 * 60.00033 * 6 5 4 30 30 H 0.96700 * 114.00234 * 59.99815 * 11 9 7 31 31 H 0.96997 * 120.00462 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.47705 * 59.99275 * 20 2 1 33 33 H 1.09006 * 109.47323 * 299.99746 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2491 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2494 8 1 3.9333 0.3054 1.2496 9 6 4.0796 -1.4435 2.4986 10 1 3.6450 -0.9839 3.3864 11 8 3.7016 -2.8204 2.4414 12 6 5.5815 -1.3371 2.5621 13 1 6.1185 -0.8077 1.7889 14 6 6.2701 -1.9157 3.6071 15 7 7.5807 -1.8225 3.6627 16 14 5.3413 -2.8308 4.9447 17 1 5.2096 -4.2608 4.5663 18 1 6.0852 -2.7242 6.2255 19 1 3.9906 -2.2351 5.1056 20 6 2.0400 -0.7213 1.2491 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2074 -2.1393 26 1 3.9333 -1.2360 -2.1388 27 1 3.9337 0.3058 -1.2489 28 1 5.1695 -1.4443 0.0001 29 1 3.7157 -2.4710 -0.0001 30 1 4.0537 -3.2934 1.6750 31 1 8.0651 -2.2292 4.3981 32 1 1.6767 -1.7489 1.2492 33 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218188791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = -89.071358 kcal Electronic energy + Delta-G solvation = -13392.823764 eV Core-core repulsion = 11223.893282 eV Total energy + Delta-G solvation = -2168.930482 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.76232 -35.69435 -32.22003 -32.01367 -30.57281 -26.98908 -25.97527 -22.78969 -21.59333 -19.71925 -18.95916 -17.15867 -15.13532 -14.76054 -14.45310 -14.11720 -13.96424 -13.50781 -12.95034 -12.73945 -12.20911 -12.05662 -11.48999 -11.39905 -11.29056 -10.91563 -10.65595 -10.46982 -10.41695 -10.16632 -9.83685 -9.63730 -9.54185 -8.90676 -8.60896 -8.26108 -6.08408 -4.18437 3.47408 3.50703 3.64136 4.54124 5.01882 5.07692 5.17891 5.22401 5.51828 5.61610 5.78366 5.86127 5.89276 5.95641 5.98635 6.07291 6.12830 6.15397 6.23392 6.33324 6.53632 6.61054 6.69081 6.73665 6.85680 7.03382 7.13201 7.45702 7.66948 8.34333 8.87744 9.06287 9.56419 11.02100 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053137 B = 0.010513 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.815665 B = 2662.627485 C = 2954.462549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.064 0.936 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.109 4.109 7 C -0.100 4.100 8 H 0.065 0.935 9 C 0.193 3.807 10 H 0.057 0.943 11 O -0.588 6.588 12 C -0.555 4.555 13 H 0.075 0.925 14 C 0.078 3.922 15 N -0.896 5.896 16 Si 0.913 3.087 17 H -0.280 1.280 18 H -0.307 1.307 19 H -0.269 1.269 20 C -0.106 4.106 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.359 0.641 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 1.788 -7.618 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.082 0.918 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.119 4.119 8 H 0.084 0.916 9 C 0.136 3.864 10 H 0.075 0.925 11 O -0.395 6.395 12 C -0.592 4.592 13 H 0.093 0.907 14 C -0.126 4.126 15 N -0.534 5.534 16 Si 0.744 3.256 17 H -0.206 1.206 18 H -0.235 1.235 19 H -0.194 1.194 20 C -0.144 4.144 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.206 0.794 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.015 1.913 -6.977 13.178 hybrid contribution 0.028 -0.525 0.215 0.568 sum -10.987 1.388 -6.762 12.976 Atomic orbital electron populations 1.21830 0.96078 1.01415 1.00929 1.21163 0.94587 0.99601 0.95844 0.91752 1.21563 0.96108 1.00225 0.96865 1.21557 0.95067 1.00681 0.98325 1.21485 1.01483 0.98466 0.93181 1.21622 0.93354 1.00196 0.96745 0.91639 1.19954 0.94523 0.78987 0.92942 0.92515 1.86352 1.77386 1.25614 1.50120 1.21617 0.90524 1.36603 1.10463 0.90720 1.25060 0.94696 0.94916 0.97889 1.69963 1.06898 1.44266 1.32249 0.86249 0.79434 0.80681 0.79270 1.20585 1.23535 1.19373 1.21617 0.96582 1.00290 0.95897 0.93003 0.93360 0.92944 0.92361 0.93049 0.92841 0.92496 0.90824 0.92708 0.79403 0.92679 0.91884 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.30 2.72 -90.62 -0.25 -1.55 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.47 5.20 -26.73 -0.14 -1.61 16 5 C -0.12 -1.74 5.92 -26.73 -0.16 -1.90 16 6 C -0.11 -1.92 4.59 -26.73 -0.12 -2.05 16 7 C -0.10 -1.94 1.97 -90.65 -0.18 -2.12 16 8 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 9 C 0.19 4.54 2.06 -27.88 -0.06 4.48 16 10 H 0.06 1.42 7.20 -51.93 -0.37 1.04 16 11 O -0.59 -13.51 10.47 -35.23 -0.37 -13.88 16 12 C -0.55 -15.35 8.64 -34.44 -0.30 -15.64 16 13 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 14 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 15 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 16 Si 0.91 23.61 26.18 -169.99 -4.45 19.16 16 17 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 19 H -0.27 -6.90 6.54 56.52 0.37 -6.53 16 20 C -0.11 -1.78 4.38 -26.76 -0.12 -1.89 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.07 1.47 6.95 -51.93 -0.36 1.11 16 29 H 0.05 0.93 6.72 -51.93 -0.35 0.59 16 30 H 0.36 7.42 7.19 45.56 0.33 7.75 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.06 1.09 7.82 -51.93 -0.41 0.68 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 254.41 15.07 3.83 3.83 Total: -1.00 -29.88 254.41 -6.22 -36.10 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.94 Total: 2.98 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.07 Total: -21.50 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.37 Total: -13.88 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.45 Total: 19.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.88 -6.22 -36.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.970 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds