Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47123 * 2 1 4 4 C 1.52999 * 109.46708 * 240.00227 * 2 1 3 5 5 C 1.53001 * 109.47187 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47280 * 59.99567 * 5 4 2 7 7 C 1.52998 * 109.47005 * 300.00735 * 6 5 4 8 8 H 1.09008 * 109.46877 * 299.99472 * 7 6 5 9 9 C 1.53002 * 109.47005 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47070 * 184.99640 * 9 7 6 11 11 O 1.42903 * 109.46923 * 304.99805 * 9 7 6 12 12 C 1.50701 * 109.47419 * 64.99566 * 9 7 6 13 13 H 1.07999 * 119.99742 * 0.02562 * 12 9 7 14 14 C 1.37875 * 120.00221 * 180.02562 * 12 9 7 15 15 N 1.31509 * 120.00392 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 119.99966 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.47157 * 90.00092 * 16 14 12 18 18 H 1.48496 * 109.47225 * 210.00367 * 16 14 12 19 19 H 1.48502 * 109.47022 * 330.00490 * 16 14 12 20 20 C 1.52989 * 109.47186 * 120.00459 * 2 1 3 21 21 H 1.08997 * 109.46584 * 300.00262 * 1 2 3 22 22 H 1.09001 * 109.46897 * 59.99644 * 1 2 3 23 23 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47143 * 299.99760 * 4 2 1 25 25 H 1.09001 * 109.47387 * 59.99843 * 4 2 1 26 26 H 1.08997 * 109.47507 * 179.97438 * 5 4 2 27 27 H 1.09008 * 109.46996 * 299.99853 * 5 4 2 28 28 H 1.08997 * 109.47298 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46432 * 60.00033 * 6 5 4 30 30 H 0.96700 * 114.00234 * 59.99815 * 11 9 7 31 31 H 0.96997 * 120.00462 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.47705 * 59.99275 * 20 2 1 33 33 H 1.09006 * 109.47323 * 299.99746 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2491 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2494 8 1 3.9333 0.3054 1.2496 9 6 4.0796 -1.4435 2.4986 10 1 3.6450 -0.9839 3.3864 11 8 3.7016 -2.8204 2.4414 12 6 5.5815 -1.3371 2.5621 13 1 6.1185 -0.8077 1.7889 14 6 6.2701 -1.9157 3.6071 15 7 7.5807 -1.8225 3.6627 16 14 5.3413 -2.8308 4.9447 17 1 5.2096 -4.2608 4.5663 18 1 6.0852 -2.7242 6.2255 19 1 3.9906 -2.2351 5.1056 20 6 2.0400 -0.7213 1.2491 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6766 -1.7489 -1.2493 25 1 1.6766 -0.2074 -2.1393 26 1 3.9333 -1.2360 -2.1388 27 1 3.9337 0.3058 -1.2489 28 1 5.1695 -1.4443 0.0001 29 1 3.7157 -2.4710 -0.0001 30 1 4.0537 -3.2934 1.6750 31 1 8.0651 -2.2292 4.3981 32 1 1.6767 -1.7489 1.2492 33 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218188791.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = -108.670773 kcal Electronic energy + Delta-G solvation = -13393.673658 eV Core-core repulsion = 11223.893282 eV Total energy + Delta-G solvation = -2169.780376 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.20351 -37.35872 -34.42908 -33.30714 -32.02771 -28.91089 -27.12634 -24.58627 -22.89842 -21.08493 -20.42635 -19.25825 -16.95585 -16.61536 -16.01193 -15.53212 -15.35948 -14.86955 -14.80652 -14.25125 -13.73197 -13.29489 -13.16194 -12.97720 -12.79053 -12.58498 -12.17653 -11.87721 -11.79077 -11.68112 -11.39576 -11.20927 -11.08725 -10.86628 -10.61959 -10.09313 -8.34654 -6.47141 1.38931 1.41633 1.56601 2.37962 2.99709 3.82678 3.88212 3.97999 4.06731 4.32187 4.40489 4.57473 4.65924 4.68807 4.73708 4.85658 4.92263 5.06334 5.06951 5.19183 5.21327 5.33142 5.41979 5.45349 5.46040 5.49560 5.61556 5.70385 5.76467 6.13036 6.65231 7.15303 7.33605 8.79569 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053137 B = 0.010513 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.815665 B = 2662.627485 C = 2954.462549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.062 0.938 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.105 4.105 7 C -0.096 4.096 8 H 0.051 0.949 9 C 0.197 3.803 10 H 0.045 0.955 11 O -0.588 6.588 12 C -0.552 4.552 13 H 0.042 0.958 14 C 0.025 3.975 15 N -0.940 5.940 16 Si 0.973 3.027 17 H -0.275 1.275 18 H -0.304 1.304 19 H -0.264 1.264 20 C -0.100 4.100 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.370 0.630 31 H 0.266 0.734 32 H 0.061 0.939 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 1.500 -8.450 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.081 0.919 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.115 4.115 8 H 0.070 0.930 9 C 0.140 3.860 10 H 0.063 0.937 11 O -0.396 6.396 12 C -0.589 4.589 13 H 0.061 0.939 14 C -0.174 4.174 15 N -0.580 5.580 16 Si 0.801 3.199 17 H -0.201 1.201 18 H -0.232 1.232 19 H -0.189 1.189 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.218 0.782 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.297 1.626 -7.823 15.512 hybrid contribution 0.786 -0.408 0.431 0.985 sum -12.511 1.218 -7.391 14.582 Atomic orbital electron populations 1.21783 0.94092 1.01971 1.01972 1.21142 0.96210 0.99077 0.94563 0.91932 1.21550 0.94515 1.00797 0.97443 1.21522 0.96472 1.00159 0.97056 1.21410 0.99462 0.99225 0.94155 1.21499 0.95603 0.98873 0.95483 0.93018 1.19803 0.91693 0.79818 0.94720 0.93676 1.86286 1.77130 1.25190 1.50982 1.21918 0.92837 1.35125 1.09047 0.93943 1.25846 0.95310 0.96083 1.00192 1.70075 1.08427 1.46086 1.33406 0.85309 0.78268 0.79502 0.76851 1.20112 1.23185 1.18885 1.21543 0.93994 1.00639 0.97568 0.92873 0.91510 0.92626 0.91870 0.90641 0.91236 0.92822 0.94057 0.91946 0.78154 0.92482 0.92064 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 2 C -0.09 -2.29 2.72 -10.80 -0.03 -2.32 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.11 -2.45 5.20 30.59 0.16 -2.29 16 5 C -0.11 -3.13 5.92 30.60 0.18 -2.95 16 6 C -0.11 -3.65 4.59 30.59 0.14 -3.51 16 7 C -0.10 -3.66 1.97 -10.81 -0.02 -3.69 16 8 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 9 C 0.20 9.24 2.06 29.85 0.06 9.30 16 10 H 0.05 2.24 7.20 -2.39 -0.02 2.22 16 11 O -0.59 -26.24 10.47 -148.98 -1.56 -27.80 16 12 C -0.55 -31.19 8.64 25.60 0.22 -30.96 16 13 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 14 C 0.02 1.47 5.47 84.66 0.46 1.93 16 15 N -0.94 -58.90 13.96 21.45 0.30 -58.60 16 16 Si 0.97 48.70 26.18 68.60 1.80 50.50 16 17 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 19 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 20 C -0.10 -3.16 4.38 30.57 0.13 -3.02 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.68 6.95 -2.39 -0.02 1.66 16 29 H 0.06 2.04 6.72 -2.39 -0.02 2.03 16 30 H 0.37 14.83 7.19 -74.06 -0.53 14.30 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 33 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -63.82 254.41 2.98 -60.83 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.48 Total: 14.77 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 1.97 Total: -39.71 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.56 Total: -27.80 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.80 Total: 50.50 kcal Total: -63.82 2.98 -60.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218188791.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.836 kcal (2) G-P(sol) polarization free energy of solvation -63.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds