Wall clock time and date at job start Mon Mar 30 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46897 * 2 1 4 4 C 1.52995 * 109.47493 * 119.99950 * 2 1 3 5 5 H 1.09004 * 109.47177 * 54.40816 * 4 2 1 6 6 C 1.50696 * 109.47294 * 174.41039 * 4 2 1 7 7 H 1.08005 * 119.99817 * 114.61220 * 6 4 2 8 8 C 1.37874 * 120.00484 * 294.88797 * 6 4 2 9 9 N 1.31520 * 119.99566 * 352.14641 * 8 6 4 10 10 Si 1.86793 * 120.00431 * 172.13900 * 8 6 4 11 11 H 1.48503 * 109.47269 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46760 * 120.00181 * 10 8 6 13 13 H 1.48498 * 109.47538 * 240.00235 * 10 8 6 14 14 C 1.53000 * 109.47149 * 294.41386 * 4 2 1 15 15 H 1.09002 * 110.80555 * 309.98691 * 14 4 2 16 16 C 1.54814 * 110.90798 * 186.36159 * 14 4 2 17 17 C 1.54107 * 104.18556 * 220.92054 * 16 14 4 18 18 O 1.43751 * 107.29387 * 357.96613 * 17 16 14 19 19 C 1.44382 * 106.97322 * 26.51728 * 18 17 16 20 20 H 1.09003 * 109.47809 * 318.25622 * 1 2 3 21 21 H 1.09000 * 109.47130 * 78.26211 * 1 2 3 22 22 H 1.09000 * 109.46994 * 198.25823 * 1 2 3 23 23 H 1.09000 * 109.47173 * 240.00403 * 2 1 3 24 24 H 1.08996 * 109.47442 * 173.33625 * 3 2 1 25 25 H 1.09002 * 109.47469 * 293.33782 * 3 2 1 26 26 H 1.09006 * 109.46794 * 53.33506 * 3 2 1 27 27 H 0.97001 * 119.99731 * 180.02562 * 9 8 6 28 28 H 1.08996 * 110.48499 * 339.59151 * 16 14 4 29 29 H 1.08994 * 110.49017 * 102.24503 * 16 14 4 30 30 H 1.09000 * 109.88052 * 117.39287 * 17 16 14 31 31 H 1.09002 * 109.87813 * 238.39282 * 17 16 14 32 32 H 1.08995 * 110.61645 * 201.43755 * 19 18 17 33 33 H 1.08998 * 110.61761 * 78.43964 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5973 -1.7159 1.3007 6 6 3.5406 -0.8421 1.1819 7 1 4.1570 -0.3224 1.9005 8 6 4.1269 -1.6116 0.1995 9 7 3.3804 -2.3618 -0.5813 10 14 5.9815 -1.5886 -0.0226 11 1 6.5882 -0.6707 0.9748 12 1 6.5205 -2.9584 0.1738 13 1 6.3102 -1.1189 -1.3924 14 6 1.6479 0.0765 2.4945 15 1 1.9281 1.1245 2.3871 16 6 2.2824 -0.5373 3.7662 17 6 1.1639 -0.4559 4.8233 18 8 0.0382 0.1901 4.2053 19 6 0.1324 -0.0644 2.7872 20 1 -0.3635 0.7668 0.6842 21 1 -0.3633 0.2091 -1.0062 22 1 -0.3633 -0.9759 0.3220 23 1 1.8933 -0.5138 -0.8900 24 1 3.1233 1.4450 0.1192 25 1 1.7772 1.9209 -0.9436 26 1 1.5824 1.9896 0.8244 27 1 3.7929 -2.9034 -1.2722 28 1 2.5648 -1.5750 3.5888 29 1 3.1476 0.0462 4.0807 30 1 0.8848 -1.4590 5.1455 31 1 1.5046 0.1268 5.6792 32 1 -0.4374 0.6760 2.2258 33 1 -0.2114 -1.0722 2.5544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219616717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:16 Heat of formation + Delta-G solvation = -66.394752 kcal Electronic energy + Delta-G solvation = -13630.770490 eV Core-core repulsion = 11462.823339 eV Total energy + Delta-G solvation = -2167.947150 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.00946 -35.92630 -32.13878 -31.22053 -28.43059 -27.14970 -25.88806 -23.11064 -21.73811 -20.14310 -18.31793 -16.23835 -15.88852 -15.02747 -14.47373 -14.25185 -13.58874 -13.20254 -12.76485 -12.58080 -12.07387 -11.45808 -11.32131 -11.15619 -10.95244 -10.77460 -10.58967 -10.39212 -10.18832 -9.82609 -9.63814 -9.41018 -9.11112 -8.88642 -8.65327 -8.29252 -6.01593 -4.02308 3.28200 3.37441 3.40507 4.43473 4.59104 5.30448 5.44020 5.56866 5.70392 5.80653 6.02189 6.08486 6.20022 6.25419 6.27989 6.41534 6.49397 6.50929 6.70620 6.78632 6.84030 6.88880 6.98237 7.03258 7.38437 7.47204 7.53654 7.77745 7.92855 8.03650 8.44593 9.00652 9.60434 11.07130 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035350 B = 0.013323 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.882765 B = 2101.082557 C = 2550.243727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.133 4.133 4 C 0.064 3.936 5 H 0.033 0.967 6 C -0.504 4.504 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.888 5.888 10 Si 0.882 3.118 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 C -0.107 4.107 15 H 0.072 0.928 16 C -0.138 4.138 17 C 0.044 3.956 18 O -0.396 6.396 19 C 0.041 3.959 20 H 0.046 0.954 21 H 0.033 0.967 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.025 0.975 26 H 0.036 0.964 27 H 0.259 0.741 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 3.644 4.094 6.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.190 4.190 4 C 0.045 3.955 5 H 0.051 0.949 6 C -0.542 4.542 7 H 0.073 0.927 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.710 3.290 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.126 4.126 15 H 0.091 0.909 16 C -0.176 4.176 17 C -0.033 4.033 18 O -0.316 6.316 19 C -0.035 4.035 20 H 0.065 0.935 21 H 0.052 0.948 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.485 3.633 4.057 6.466 hybrid contribution 1.268 -0.225 -0.379 1.342 sum -2.217 3.408 3.678 5.483 Atomic orbital electron populations 1.22221 0.98811 1.00401 0.99443 1.21122 0.91589 0.95219 1.02910 1.21799 1.02000 0.96986 0.98205 1.18736 0.95759 0.93491 0.87480 0.94888 1.21131 0.91275 1.28582 1.13261 0.92660 1.24934 0.97451 0.95125 0.96288 1.69961 1.34823 1.27100 1.20804 0.86701 0.86593 0.77698 0.78014 1.19825 1.21257 1.21093 1.22859 0.92208 1.00778 0.96733 0.90921 1.22846 0.97263 1.03000 0.94477 1.23175 0.87098 0.96487 0.96516 1.88755 1.46455 1.75475 1.20868 1.24187 0.98326 1.00488 0.80468 0.93547 0.94798 0.93423 0.89743 0.92039 0.95548 0.94503 0.93164 0.90051 0.91716 0.93458 0.91194 0.89143 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 7.87 37.15 0.29 -2.56 16 2 C -0.09 -1.97 2.59 -90.62 -0.23 -2.20 16 3 C -0.13 -2.66 8.39 37.16 0.31 -2.35 16 4 C 0.06 1.48 1.07 -91.78 -0.10 1.38 16 5 H 0.03 0.86 7.80 -51.93 -0.41 0.46 16 6 C -0.50 -12.97 6.57 -34.44 -0.23 -13.20 16 7 H 0.06 1.43 7.36 -52.48 -0.39 1.04 16 8 C 0.06 1.69 5.18 -17.82 -0.09 1.60 16 9 N -0.89 -24.76 12.06 55.43 0.67 -24.10 16 10 Si 0.88 20.81 29.54 -169.99 -5.02 15.78 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C -0.11 -2.16 2.35 -88.61 -0.21 -2.37 16 15 H 0.07 1.48 6.04 -51.93 -0.31 1.16 16 16 C -0.14 -2.60 5.57 -25.20 -0.14 -2.75 16 17 C 0.04 0.74 7.70 37.74 0.29 1.04 16 18 O -0.40 -7.47 11.52 -35.23 -0.41 -7.87 16 19 C 0.04 0.76 5.48 38.21 0.21 0.97 16 20 H 0.05 0.79 5.14 -51.93 -0.27 0.52 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.90 7.40 -51.93 -0.38 0.51 16 23 H 0.08 2.14 6.70 -51.93 -0.35 1.80 16 24 H 0.06 1.33 7.20 -51.93 -0.37 0.95 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.68 6.40 -51.93 -0.33 0.34 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.08 1.64 7.64 -51.93 -0.40 1.25 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.57 5.57 -51.93 -0.29 1.28 16 33 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 LS Contribution 250.99 15.07 3.78 3.78 Total: -1.00 -27.07 250.99 -6.01 -33.08 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.13 Total: -0.25 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 0.10 Total: -20.44 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.67 Total: -24.10 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.41 Total: -7.87 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.07 -6.01 -33.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.313 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds