Wall clock time and date at job start Mon Mar 30 2020 02:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47369 * 2 1 4 4 C 1.53000 * 109.47414 * 120.00336 * 2 1 3 5 5 H 1.08999 * 109.47350 * 186.97250 * 4 2 1 6 6 C 1.50701 * 109.47212 * 66.97205 * 4 2 1 7 7 H 1.08004 * 119.99846 * 245.09466 * 6 4 2 8 8 C 1.37871 * 120.00106 * 65.09451 * 6 4 2 9 9 N 1.31518 * 119.99942 * 7.27179 * 8 6 4 10 10 Si 1.86798 * 120.00279 * 187.27312 * 8 6 4 11 11 H 1.48505 * 109.47088 * 89.99706 * 10 8 6 12 12 H 1.48491 * 109.47435 * 210.00157 * 10 8 6 13 13 H 1.48505 * 109.46908 * 330.00205 * 10 8 6 14 14 C 1.53001 * 109.46581 * 306.97222 * 4 2 1 15 15 H 1.08995 * 110.44001 * 53.00756 * 14 4 2 16 16 C 1.54810 * 110.48917 * 290.45627 * 14 4 2 17 17 C 1.55226 * 101.98909 * 220.52056 * 16 14 4 18 18 O 1.44379 * 103.56198 * 36.88416 * 17 16 14 19 19 C 1.43747 * 106.97828 * 320.00660 * 18 17 16 20 20 H 1.09003 * 109.46768 * 306.49668 * 1 2 3 21 21 H 1.09000 * 109.46864 * 186.49853 * 1 2 3 22 22 H 1.09002 * 109.47279 * 66.49850 * 1 2 3 23 23 H 1.09000 * 109.46960 * 240.00331 * 2 1 3 24 24 H 1.08995 * 109.47047 * 51.29852 * 3 2 1 25 25 H 1.08999 * 109.47416 * 171.30549 * 3 2 1 26 26 H 1.09010 * 109.46801 * 291.30147 * 3 2 1 27 27 H 0.97004 * 119.99985 * 180.02562 * 9 8 6 28 28 H 1.09004 * 110.90900 * 338.64725 * 16 14 4 29 29 H 1.09003 * 110.90207 * 102.24978 * 16 14 4 30 30 H 1.08999 * 110.52356 * 278.38810 * 17 16 14 31 31 H 1.08995 * 110.77886 * 155.50200 * 17 16 14 32 32 H 1.08996 * 109.87907 * 267.09313 * 19 18 17 33 33 H 1.09000 * 109.99833 * 146.00929 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1229 -0.6145 1.3137 6 6 1.6836 -2.1832 1.1659 7 1 0.9919 -2.6116 1.8763 8 6 2.2403 -2.9736 0.1830 9 7 3.1877 -2.4909 -0.5910 10 14 1.6489 -4.7302 -0.0494 11 1 0.5236 -4.7496 -1.0183 12 1 2.7633 -5.5632 -0.5684 13 1 1.1894 -5.2744 1.2537 14 6 1.3921 -0.1083 2.4922 15 1 0.3072 -0.0949 2.3886 16 6 1.9309 1.3227 2.7344 17 6 2.0961 1.3482 4.2776 18 8 2.5472 0.0132 4.5920 19 6 1.8036 -0.8889 3.7556 20 1 -0.3633 0.6113 0.8262 21 1 -0.3633 -1.0211 0.1163 22 1 -0.3634 0.4098 -0.9424 23 1 1.8933 -0.5138 -0.8900 24 1 1.5554 1.9992 0.8020 25 1 3.1189 1.4464 0.1553 26 1 1.8092 1.9095 -0.9576 27 1 3.5791 -3.0469 -1.2828 28 1 2.8909 1.4660 2.2383 29 1 1.2093 2.0707 2.4060 30 1 1.1411 1.5544 4.7608 31 1 2.8421 2.0853 4.5745 32 1 0.9150 -1.2359 4.2828 33 1 2.4263 -1.7398 3.4791 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219616790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:18 Heat of formation + Delta-G solvation = -64.005353 kcal Electronic energy + Delta-G solvation = -13659.824930 eV Core-core repulsion = 11491.981392 eV Total energy + Delta-G solvation = -2167.843538 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.02539 -35.92133 -32.21225 -30.72530 -29.24270 -26.42950 -25.98630 -23.20204 -21.91071 -20.00872 -18.30078 -16.11802 -15.84486 -15.26363 -14.49016 -14.19886 -13.42921 -13.13646 -12.84188 -12.23413 -12.05280 -11.64446 -11.40002 -11.19681 -10.92478 -10.62643 -10.54016 -10.46423 -10.23735 -9.83719 -9.65985 -9.40284 -9.08633 -8.80295 -8.58799 -8.27573 -5.99936 -4.01805 3.30858 3.38533 3.40724 4.44674 4.64031 5.31881 5.40823 5.49559 5.63540 5.82907 6.07469 6.14707 6.22103 6.24541 6.30416 6.39689 6.48509 6.51575 6.66318 6.78496 6.80911 6.90647 6.96701 7.13984 7.38398 7.50773 7.59251 7.79358 7.97116 8.05848 8.44939 9.01327 9.61145 11.08398 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.013628 C = 0.011174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.326847 B = 2054.148702 C = 2505.156994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.154 4.154 4 C 0.064 3.936 5 H 0.034 0.966 6 C -0.511 4.511 7 H 0.055 0.945 8 C 0.065 3.935 9 N -0.886 5.886 10 Si 0.883 3.117 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.110 4.110 15 H 0.069 0.931 16 C -0.151 4.151 17 C 0.042 3.958 18 O -0.390 6.390 19 C 0.054 3.946 20 H 0.035 0.965 21 H 0.060 0.940 22 H 0.025 0.975 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.259 0.741 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 6.133 3.744 7.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.106 4.106 3 C -0.211 4.211 4 C 0.046 3.954 5 H 0.053 0.947 6 C -0.549 4.549 7 H 0.073 0.927 8 C -0.137 4.137 9 N -0.525 5.525 10 Si 0.711 3.289 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.128 4.128 15 H 0.088 0.912 16 C -0.188 4.188 17 C -0.035 4.035 18 O -0.310 6.310 19 C -0.022 4.022 20 H 0.054 0.946 21 H 0.079 0.921 22 H 0.044 0.956 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.189 6.011 3.751 7.769 hybrid contribution -0.545 -0.943 -0.475 1.188 sum -3.734 5.068 3.276 7.096 Atomic orbital electron populations 1.21777 0.97727 1.01310 0.98104 1.21089 0.93604 0.93074 1.02856 1.22291 1.00475 0.98866 0.99514 1.18764 0.95670 0.93452 0.87533 0.94747 1.21128 1.26238 0.93711 1.13847 0.92722 1.24927 0.94603 0.97854 0.96275 1.69952 1.24977 1.36720 1.20815 0.86743 0.78433 0.85315 0.78429 1.20772 1.21407 1.19944 1.22663 1.00328 0.92416 0.97426 0.91229 1.23566 1.02042 0.98436 0.94802 1.23572 0.98463 0.85843 0.95636 1.88791 1.63329 1.16098 1.62734 1.23368 0.95521 0.93822 0.89489 0.94644 0.92133 0.95620 0.89846 0.92898 0.93636 0.95273 0.93079 0.90295 0.91139 0.93495 0.90281 0.94298 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.36 37.16 0.31 -2.33 16 2 C -0.09 -1.93 2.58 -90.62 -0.23 -2.17 16 3 C -0.15 -2.93 7.73 37.16 0.29 -2.64 16 4 C 0.06 1.51 1.04 -91.77 -0.10 1.42 16 5 H 0.03 0.92 7.93 -51.93 -0.41 0.51 16 6 C -0.51 -13.27 6.23 -34.44 -0.21 -13.48 16 7 H 0.05 1.41 7.41 -52.48 -0.39 1.02 16 8 C 0.07 1.75 5.18 -17.82 -0.09 1.66 16 9 N -0.89 -24.96 12.04 55.43 0.67 -24.29 16 10 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C -0.11 -2.20 2.21 -89.09 -0.20 -2.39 16 15 H 0.07 1.37 6.14 -51.93 -0.32 1.05 16 16 C -0.15 -2.59 4.63 -24.60 -0.11 -2.71 16 17 C 0.04 0.68 7.72 38.34 0.30 0.97 16 18 O -0.39 -7.76 11.52 -35.23 -0.41 -8.17 16 19 C 0.05 1.10 6.72 37.73 0.25 1.35 16 20 H 0.03 0.64 6.55 -51.93 -0.34 0.30 16 21 H 0.06 1.30 7.26 -51.93 -0.38 0.92 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 2.14 6.65 -51.93 -0.35 1.80 16 24 H 0.05 0.90 4.63 -51.93 -0.24 0.66 16 25 H 0.04 0.88 7.61 -51.93 -0.40 0.49 16 26 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.08 1.43 6.37 -51.93 -0.33 1.10 16 29 H 0.07 1.08 6.69 -51.93 -0.35 0.73 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 2.26 6.86 -51.93 -0.36 1.90 16 LS Contribution 249.96 15.07 3.77 3.77 Total: -1.00 -27.41 249.96 -5.90 -33.31 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.10 Total: -0.22 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 0.20 Total: -20.32 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.67 Total: -24.29 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.41 Total: -8.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.41 -5.90 -33.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.696 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds