Wall clock time and date at job start Mon Mar 30 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47369 * 2 1 4 4 C 1.53000 * 109.47414 * 120.00336 * 2 1 3 5 5 H 1.08999 * 109.47350 * 186.97250 * 4 2 1 6 6 C 1.50701 * 109.47212 * 66.97205 * 4 2 1 7 7 H 1.08004 * 119.99846 * 245.09466 * 6 4 2 8 8 C 1.37871 * 120.00106 * 65.09451 * 6 4 2 9 9 N 1.31518 * 119.99942 * 7.27179 * 8 6 4 10 10 Si 1.86798 * 120.00279 * 187.27312 * 8 6 4 11 11 H 1.48505 * 109.47088 * 89.99706 * 10 8 6 12 12 H 1.48491 * 109.47435 * 210.00157 * 10 8 6 13 13 H 1.48505 * 109.46908 * 330.00205 * 10 8 6 14 14 C 1.53001 * 109.46581 * 306.97222 * 4 2 1 15 15 H 1.08995 * 110.44001 * 53.00756 * 14 4 2 16 16 C 1.54810 * 110.48917 * 290.45627 * 14 4 2 17 17 C 1.55226 * 101.98909 * 220.52056 * 16 14 4 18 18 O 1.44379 * 103.56198 * 36.88416 * 17 16 14 19 19 C 1.43747 * 106.97828 * 320.00660 * 18 17 16 20 20 H 1.09003 * 109.46768 * 306.49668 * 1 2 3 21 21 H 1.09000 * 109.46864 * 186.49853 * 1 2 3 22 22 H 1.09002 * 109.47279 * 66.49850 * 1 2 3 23 23 H 1.09000 * 109.46960 * 240.00331 * 2 1 3 24 24 H 1.08995 * 109.47047 * 51.29852 * 3 2 1 25 25 H 1.08999 * 109.47416 * 171.30549 * 3 2 1 26 26 H 1.09010 * 109.46801 * 291.30147 * 3 2 1 27 27 H 0.97004 * 119.99985 * 180.02562 * 9 8 6 28 28 H 1.09004 * 110.90900 * 338.64725 * 16 14 4 29 29 H 1.09003 * 110.90207 * 102.24978 * 16 14 4 30 30 H 1.08999 * 110.52356 * 278.38810 * 17 16 14 31 31 H 1.08995 * 110.77886 * 155.50200 * 17 16 14 32 32 H 1.08996 * 109.87907 * 267.09313 * 19 18 17 33 33 H 1.09000 * 109.99833 * 146.00929 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1229 -0.6145 1.3137 6 6 1.6836 -2.1832 1.1659 7 1 0.9919 -2.6116 1.8763 8 6 2.2403 -2.9736 0.1830 9 7 3.1877 -2.4909 -0.5910 10 14 1.6489 -4.7302 -0.0494 11 1 0.5236 -4.7496 -1.0183 12 1 2.7633 -5.5632 -0.5684 13 1 1.1894 -5.2744 1.2537 14 6 1.3921 -0.1083 2.4922 15 1 0.3072 -0.0949 2.3886 16 6 1.9309 1.3227 2.7344 17 6 2.0961 1.3482 4.2776 18 8 2.5472 0.0132 4.5920 19 6 1.8036 -0.8889 3.7556 20 1 -0.3633 0.6113 0.8262 21 1 -0.3633 -1.0211 0.1163 22 1 -0.3634 0.4098 -0.9424 23 1 1.8933 -0.5138 -0.8900 24 1 1.5554 1.9992 0.8020 25 1 3.1189 1.4464 0.1553 26 1 1.8092 1.9095 -0.9576 27 1 3.5791 -3.0469 -1.2828 28 1 2.8909 1.4660 2.2383 29 1 1.2093 2.0707 2.4060 30 1 1.1411 1.5544 4.7608 31 1 2.8421 2.0853 4.5745 32 1 0.9150 -1.2359 4.2828 33 1 2.4263 -1.7398 3.4791 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219616790.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:17 Heat of formation + Delta-G solvation = -80.310978 kcal Electronic energy + Delta-G solvation = -13660.531995 eV Core-core repulsion = 11491.981392 eV Total energy + Delta-G solvation = -2168.550603 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.57474 -37.60449 -34.20128 -32.29241 -30.81036 -28.09541 -27.69669 -25.06790 -23.35921 -21.58702 -20.07311 -18.04511 -17.38141 -16.88921 -16.30803 -15.72250 -15.12246 -14.78594 -14.54842 -13.89195 -13.55106 -13.35234 -13.10530 -12.81908 -12.79562 -12.34809 -12.14942 -12.03586 -11.95681 -11.42299 -11.34926 -11.19272 -10.67847 -10.58943 -10.33911 -10.25014 -8.06453 -6.12828 1.40207 1.42520 1.50342 2.45771 3.19392 3.27541 3.95082 4.07917 4.20738 4.46597 4.53803 4.61557 4.63378 4.65301 4.92981 4.95177 4.96830 5.02522 5.14181 5.18024 5.23700 5.27890 5.38075 5.46840 5.65538 5.73739 5.82913 6.01941 6.14267 6.21380 6.45631 6.99319 7.52626 9.01358 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034717 B = 0.013628 C = 0.011174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.326847 B = 2054.148702 C = 2505.156994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.067 3.933 5 H -0.011 1.011 6 C -0.514 4.514 7 H 0.053 0.947 8 C 0.015 3.985 9 N -0.919 5.919 10 Si 0.938 3.062 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.268 1.268 14 C -0.108 4.108 15 H 0.081 0.919 16 C -0.146 4.146 17 C 0.040 3.960 18 O -0.411 6.411 19 C 0.057 3.943 20 H 0.060 0.940 21 H 0.039 0.961 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.257 0.743 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 7.483 4.614 10.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.108 4.108 3 C -0.202 4.202 4 C 0.049 3.951 5 H 0.007 0.993 6 C -0.552 4.552 7 H 0.072 0.928 8 C -0.183 4.183 9 N -0.559 5.559 10 Si 0.765 3.235 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.193 1.193 14 C -0.126 4.126 15 H 0.099 0.901 16 C -0.183 4.183 17 C -0.036 4.036 18 O -0.331 6.331 19 C -0.019 4.019 20 H 0.079 0.921 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.801 7.364 4.631 9.936 hybrid contribution -0.018 -1.339 -0.710 1.515 sum -4.818 6.025 3.922 8.654 Atomic orbital electron populations 1.21680 0.95669 1.00710 1.00082 1.20974 0.95314 0.94497 1.00011 1.22188 0.99722 0.96934 1.01380 1.18641 0.93254 0.92944 0.90309 0.99268 1.21476 1.25336 0.95283 1.13097 0.92846 1.25616 0.94923 1.01360 0.96431 1.70086 1.26345 1.37895 1.21577 0.85855 0.77831 0.81324 0.78486 1.20271 1.21699 1.19256 1.22565 1.00569 0.94151 0.95340 0.90072 1.23519 1.01957 0.97000 0.95830 1.23830 1.00562 0.84420 0.94799 1.88765 1.63900 1.17824 1.62599 1.23208 0.95350 0.93268 0.90115 0.92066 0.94206 0.93986 0.94168 0.90176 0.95023 0.93851 0.93440 0.91694 0.88146 0.90919 0.87941 0.92652 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.36 71.98 0.60 -4.12 16 2 C -0.09 -3.91 2.58 -10.79 -0.03 -3.94 16 3 C -0.15 -5.27 7.73 71.98 0.56 -4.72 16 4 C 0.07 3.19 1.04 -11.54 -0.01 3.18 16 5 H -0.01 -0.61 7.93 -2.39 -0.02 -0.63 16 6 C -0.51 -27.13 6.23 25.60 0.16 -26.97 16 7 H 0.05 2.77 7.41 -2.91 -0.02 2.75 16 8 C 0.01 0.82 5.18 84.65 0.44 1.26 16 9 N -0.92 -53.64 12.04 21.45 0.26 -53.38 16 10 Si 0.94 43.66 29.54 68.60 2.03 45.68 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C -0.11 -4.15 2.21 -9.80 -0.02 -4.17 16 15 H 0.08 2.94 6.14 -2.39 -0.01 2.93 16 16 C -0.15 -4.58 4.63 31.98 0.15 -4.43 16 17 C 0.04 1.15 7.72 72.75 0.56 1.71 16 18 O -0.41 -15.69 11.52 -148.98 -1.72 -17.41 16 19 C 0.06 2.27 6.72 72.36 0.49 2.75 16 20 H 0.06 1.99 6.55 -2.39 -0.02 1.97 16 21 H 0.04 1.65 7.26 -2.39 -0.02 1.63 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.04 2.11 6.65 -2.39 -0.02 2.10 16 24 H 0.08 2.44 4.63 -2.39 -0.01 2.43 16 25 H 0.03 1.21 7.61 -2.39 -0.02 1.19 16 26 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.65 16 28 H 0.06 2.24 6.37 -2.39 -0.02 2.22 16 29 H 0.10 2.56 6.69 -2.39 -0.02 2.54 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 3.07 6.86 -2.39 -0.02 3.06 16 Total: -1.00 -60.32 249.96 4.53 -55.79 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.07 Total: 8.75 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 2.89 Total: -39.43 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.26 Total: -53.38 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.72 Total: -17.41 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -60.32 4.53 -55.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616790.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.521 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds