Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47224 * 2 1 4 4 C 1.53004 * 109.47156 * 120.00343 * 2 1 3 5 5 H 1.09002 * 109.47013 * 183.51969 * 4 2 1 6 6 C 1.50697 * 109.46693 * 303.51669 * 4 2 1 7 7 H 1.08000 * 120.00233 * 64.47929 * 6 4 2 8 8 C 1.37874 * 120.00013 * 244.46868 * 6 4 2 9 9 N 1.31515 * 120.00366 * 183.77654 * 8 6 4 10 10 Si 1.86798 * 120.00149 * 3.78112 * 8 6 4 11 11 H 1.48497 * 109.47314 * 87.02736 * 10 8 6 12 12 H 1.48501 * 109.46794 * 327.02925 * 10 8 6 13 13 H 1.48503 * 109.47287 * 207.03059 * 10 8 6 14 14 C 1.52998 * 109.47065 * 63.51919 * 4 2 1 15 15 H 1.09003 * 110.45575 * 299.16997 * 14 4 2 16 16 C 1.54503 * 110.51356 * 61.77439 * 14 4 2 17 17 C 1.54485 * 104.06413 * 118.64331 * 16 14 4 18 18 O 1.44425 * 104.79945 * 23.98009 * 17 16 14 19 19 C 1.44644 * 105.36901 * 319.56611 * 18 17 16 20 20 H 1.09002 * 109.46844 * 304.14718 * 1 2 3 21 21 H 1.09000 * 109.47101 * 64.14044 * 1 2 3 22 22 H 1.08994 * 109.47191 * 184.14699 * 1 2 3 23 23 H 1.09000 * 109.46998 * 240.00334 * 2 1 3 24 24 H 1.09004 * 109.46946 * 184.47796 * 3 2 1 25 25 H 1.08995 * 109.47253 * 304.47984 * 3 2 1 26 26 H 1.09003 * 109.46829 * 64.47996 * 3 2 1 27 27 H 0.96999 * 120.00385 * 180.02562 * 9 8 6 28 28 H 1.09000 * 110.51226 * 237.28780 * 16 14 4 29 29 H 1.09003 * 110.51188 * 0.02562 * 16 14 4 30 30 H 1.09000 * 110.36915 * 142.80918 * 17 16 14 31 31 H 1.08997 * 110.36825 * 265.04119 * 17 16 14 32 32 H 1.09008 * 110.34027 * 281.58850 * 19 18 17 33 33 H 1.09007 * 110.50840 * 159.19183 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1282 -0.6670 1.2813 6 6 1.4677 -0.0630 2.4781 7 1 0.4027 -0.0843 2.6558 8 6 2.3039 0.5662 3.3758 9 7 1.8141 1.0759 4.4848 10 14 4.1325 0.6951 3.0168 11 1 4.3932 1.9110 2.2052 12 1 4.5751 -0.5064 2.2645 13 1 4.8830 0.7829 4.2952 14 6 1.6036 -2.1871 1.2056 15 1 0.5162 -2.2605 1.1880 16 6 2.2141 -2.8975 -0.0231 17 6 3.0889 -4.0157 0.5860 18 8 2.5163 -4.2639 1.8885 19 6 2.1786 -2.9592 2.4137 20 1 -0.3633 0.5769 0.8505 21 1 -0.3633 0.4482 -0.9248 22 1 -0.3633 -1.0249 0.0743 23 1 1.8933 -0.5138 -0.8900 24 1 3.1271 1.4435 -0.0802 25 1 1.6127 1.9790 -0.8471 26 1 1.7437 1.9326 0.9274 27 1 2.4023 1.5190 5.1162 28 1 1.4287 -3.3242 -0.6469 29 1 2.8273 -2.2046 -0.5993 30 1 3.0380 -4.9145 -0.0285 31 1 4.1215 -3.6800 0.6814 32 1 3.0709 -2.4608 2.7929 33 1 1.4288 -3.0465 3.2001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219616848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -68.211470 kcal Electronic energy + Delta-G solvation = -13680.801320 eV Core-core repulsion = 11512.775391 eV Total energy + Delta-G solvation = -2168.025929 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98948 -36.07631 -32.15248 -31.29737 -29.03434 -26.58216 -26.13892 -23.39201 -21.74150 -20.29718 -18.05357 -17.09817 -15.60751 -15.24146 -14.63667 -14.00194 -13.81169 -13.27863 -12.78729 -12.53583 -12.33088 -11.68818 -11.52438 -11.26888 -11.06214 -10.86461 -10.76172 -10.33923 -10.24275 -10.01315 -9.69120 -9.44609 -9.25316 -8.94338 -8.78409 -8.49155 -6.07846 -4.05240 3.25710 3.33534 3.35918 4.39849 4.61914 5.19139 5.36300 5.40091 5.61693 5.73546 5.92070 5.93559 6.07105 6.15054 6.23057 6.32663 6.42467 6.44580 6.56697 6.64809 6.70732 6.73927 6.85949 6.98047 7.13124 7.21495 7.33117 7.37220 7.52807 7.80501 8.53949 8.98511 9.55874 11.05364 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.017105 C = 0.013450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.674544 B = 1636.560628 C = 2081.214978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C -0.139 4.139 4 C 0.015 3.985 5 H 0.040 0.960 6 C -0.497 4.497 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.901 5.901 10 Si 0.865 3.135 11 H -0.275 1.275 12 H -0.264 1.264 13 H -0.292 1.292 14 C -0.102 4.102 15 H 0.073 0.927 16 C -0.157 4.157 17 C 0.046 3.954 18 O -0.393 6.393 19 C 0.062 3.938 20 H 0.066 0.934 21 H 0.028 0.972 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -4.541 -8.295 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.004 4.004 5 H 0.059 0.941 6 C -0.534 4.534 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.540 5.540 10 Si 0.694 3.306 11 H -0.200 1.200 12 H -0.189 1.189 13 H -0.218 1.218 14 C -0.122 4.122 15 H 0.092 0.908 16 C -0.194 4.194 17 C -0.031 4.031 18 O -0.313 6.313 19 C -0.014 4.014 20 H 0.085 0.915 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.759 -4.634 -8.002 9.413 hybrid contribution 1.083 0.433 -0.196 1.183 sum 2.842 -4.200 -8.199 9.640 Atomic orbital electron populations 1.21746 0.96305 1.00767 1.00223 1.21179 0.95558 0.95739 0.97887 1.21782 0.98999 0.97271 1.01603 1.19448 0.96667 0.89809 0.94476 0.94147 1.20920 0.95657 1.33399 1.03456 0.90599 1.25050 0.97747 0.95244 0.94736 1.69891 1.35542 1.38629 1.09902 0.87094 0.86985 0.79028 0.77515 1.20040 1.18925 1.21846 1.22618 1.00267 0.97586 0.91683 0.90846 1.23109 0.99412 0.97616 0.99298 1.23304 0.96539 0.98146 0.85154 1.89042 1.81613 1.29206 1.31402 1.23450 0.99729 0.81348 0.96890 0.91519 0.95329 0.93742 0.94272 0.94672 0.94805 0.90859 0.92756 0.91866 0.90919 0.90351 0.93218 0.92420 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.59 37.16 0.32 -2.15 16 2 C -0.08 -1.65 2.54 -90.62 -0.23 -1.88 16 3 C -0.14 -2.73 8.75 37.16 0.33 -2.41 16 4 C 0.01 0.32 0.84 -91.77 -0.08 0.25 16 5 H 0.04 0.93 4.40 -51.93 -0.23 0.70 16 6 C -0.50 -12.73 6.23 -34.44 -0.21 -12.95 16 7 H 0.08 2.14 7.23 -52.49 -0.38 1.76 16 8 C 0.07 2.00 5.42 -17.82 -0.10 1.90 16 9 N -0.90 -26.49 13.96 55.43 0.77 -25.71 16 10 Si 0.87 20.93 27.11 -169.99 -4.61 16.32 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.26 -6.13 6.14 56.52 0.35 -5.78 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C -0.10 -2.03 2.34 -89.06 -0.21 -2.23 16 15 H 0.07 1.47 6.54 -51.93 -0.34 1.13 16 16 C -0.16 -2.61 6.16 -25.16 -0.15 -2.76 16 17 C 0.05 0.75 7.64 37.94 0.29 1.04 16 18 O -0.39 -7.70 11.65 -35.23 -0.41 -8.11 16 19 C 0.06 1.27 6.65 37.93 0.25 1.53 16 20 H 0.07 1.37 6.84 -51.93 -0.36 1.01 16 21 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.04 0.79 6.36 -51.93 -0.33 0.46 16 23 H 0.04 0.70 6.54 -51.93 -0.34 0.36 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.62 7.15 -51.93 -0.37 1.25 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.17 6.57 -51.93 -0.34 0.83 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.27 7.85 -51.92 -0.41 0.86 16 33 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -27.77 253.02 -5.47 -33.24 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.24 Total: 0.12 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 0.21 Total: -19.66 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.71 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.41 Total: -8.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.61 Total: 16.32 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.77 -5.47 -33.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.969 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds