Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47224 * 2 1 4 4 C 1.53004 * 109.47156 * 120.00343 * 2 1 3 5 5 H 1.09002 * 109.47013 * 183.51969 * 4 2 1 6 6 C 1.50697 * 109.46693 * 303.51669 * 4 2 1 7 7 H 1.08000 * 120.00233 * 64.47929 * 6 4 2 8 8 C 1.37874 * 120.00013 * 244.46868 * 6 4 2 9 9 N 1.31515 * 120.00366 * 183.77654 * 8 6 4 10 10 Si 1.86798 * 120.00149 * 3.78112 * 8 6 4 11 11 H 1.48497 * 109.47314 * 87.02736 * 10 8 6 12 12 H 1.48501 * 109.46794 * 327.02925 * 10 8 6 13 13 H 1.48503 * 109.47287 * 207.03059 * 10 8 6 14 14 C 1.52998 * 109.47065 * 63.51919 * 4 2 1 15 15 H 1.09003 * 110.45575 * 299.16997 * 14 4 2 16 16 C 1.54503 * 110.51356 * 61.77439 * 14 4 2 17 17 C 1.54485 * 104.06413 * 118.64331 * 16 14 4 18 18 O 1.44425 * 104.79945 * 23.98009 * 17 16 14 19 19 C 1.44644 * 105.36901 * 319.56611 * 18 17 16 20 20 H 1.09002 * 109.46844 * 304.14718 * 1 2 3 21 21 H 1.09000 * 109.47101 * 64.14044 * 1 2 3 22 22 H 1.08994 * 109.47191 * 184.14699 * 1 2 3 23 23 H 1.09000 * 109.46998 * 240.00334 * 2 1 3 24 24 H 1.09004 * 109.46946 * 184.47796 * 3 2 1 25 25 H 1.08995 * 109.47253 * 304.47984 * 3 2 1 26 26 H 1.09003 * 109.46829 * 64.47996 * 3 2 1 27 27 H 0.96999 * 120.00385 * 180.02562 * 9 8 6 28 28 H 1.09000 * 110.51226 * 237.28780 * 16 14 4 29 29 H 1.09003 * 110.51188 * 0.02562 * 16 14 4 30 30 H 1.09000 * 110.36915 * 142.80918 * 17 16 14 31 31 H 1.08997 * 110.36825 * 265.04119 * 17 16 14 32 32 H 1.09008 * 110.34027 * 281.58850 * 19 18 17 33 33 H 1.09007 * 110.50840 * 159.19183 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1282 -0.6670 1.2813 6 6 1.4677 -0.0630 2.4781 7 1 0.4027 -0.0843 2.6558 8 6 2.3039 0.5662 3.3758 9 7 1.8141 1.0759 4.4848 10 14 4.1325 0.6951 3.0168 11 1 4.3932 1.9110 2.2052 12 1 4.5751 -0.5064 2.2645 13 1 4.8830 0.7829 4.2952 14 6 1.6036 -2.1871 1.2056 15 1 0.5162 -2.2605 1.1880 16 6 2.2141 -2.8975 -0.0231 17 6 3.0889 -4.0157 0.5860 18 8 2.5163 -4.2639 1.8885 19 6 2.1786 -2.9592 2.4137 20 1 -0.3633 0.5769 0.8505 21 1 -0.3633 0.4482 -0.9248 22 1 -0.3633 -1.0249 0.0743 23 1 1.8933 -0.5138 -0.8900 24 1 3.1271 1.4435 -0.0802 25 1 1.6127 1.9790 -0.8471 26 1 1.7437 1.9326 0.9274 27 1 2.4023 1.5190 5.1162 28 1 1.4287 -3.3242 -0.6469 29 1 2.8273 -2.2046 -0.5993 30 1 3.0380 -4.9145 -0.0285 31 1 4.1215 -3.6800 0.6814 32 1 3.0709 -2.4608 2.7929 33 1 1.4288 -3.0465 3.2001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219616848.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -85.352810 kcal Electronic energy + Delta-G solvation = -13681.544625 eV Core-core repulsion = 11512.775391 eV Total energy + Delta-G solvation = -2168.769233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51589 -37.69953 -34.18978 -32.80715 -30.54671 -28.31138 -27.74882 -25.15495 -23.21648 -21.84619 -19.75783 -19.02063 -17.11646 -16.80125 -16.19027 -15.87018 -15.41786 -14.82382 -14.68539 -14.11819 -13.88861 -13.32756 -13.17730 -12.93690 -12.63940 -12.53292 -12.28732 -11.96685 -11.77184 -11.67882 -11.47912 -11.11851 -10.78600 -10.67793 -10.56631 -10.46247 -8.19787 -6.18133 1.33059 1.35023 1.41821 2.37835 3.13863 3.21230 3.91875 3.98504 4.20274 4.29517 4.36812 4.47755 4.54247 4.65429 4.86462 4.89799 4.94768 4.98296 5.05617 5.11202 5.16140 5.19294 5.29861 5.37939 5.53306 5.58560 5.67239 5.73252 5.92101 6.01122 6.45527 6.88584 7.45307 8.97311 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.017105 C = 0.013450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.674544 B = 1636.560628 C = 2081.214978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.139 4.139 4 C 0.015 3.985 5 H 0.035 0.965 6 C -0.476 4.476 7 H 0.038 0.962 8 C 0.019 3.981 9 N -0.954 5.954 10 Si 0.914 3.086 11 H -0.265 1.265 12 H -0.244 1.244 13 H -0.300 1.300 14 C -0.103 4.103 15 H 0.068 0.932 16 C -0.148 4.148 17 C 0.038 3.962 18 O -0.405 6.405 19 C 0.063 3.937 20 H 0.033 0.967 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.260 0.740 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.722 -5.613 -11.192 12.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.104 4.104 3 C -0.196 4.196 4 C -0.004 4.004 5 H 0.053 0.947 6 C -0.514 4.514 7 H 0.056 0.944 8 C -0.177 4.177 9 N -0.596 5.596 10 Si 0.741 3.259 11 H -0.190 1.190 12 H -0.168 1.168 13 H -0.227 1.227 14 C -0.122 4.122 15 H 0.087 0.913 16 C -0.185 4.185 17 C -0.038 4.038 18 O -0.324 6.324 19 C -0.014 4.014 20 H 0.052 0.948 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.739 -5.722 -10.935 12.642 hybrid contribution 0.693 0.725 0.678 1.211 sum 3.432 -4.997 -10.257 11.914 Atomic orbital electron populations 1.21679 0.95776 1.00877 1.00224 1.21177 0.96023 0.95579 0.97574 1.21761 0.99487 0.97413 1.00958 1.19440 0.96034 0.91150 0.93794 0.94738 1.21095 0.93834 1.31926 1.04553 0.94370 1.25720 1.01762 0.95597 0.94642 1.70040 1.36968 1.41084 1.11491 0.86276 0.82336 0.80012 0.77261 1.19044 1.16842 1.22732 1.22514 1.00147 0.96289 0.93277 0.91334 1.23074 1.00060 0.97550 0.97845 1.23593 0.96504 0.99764 0.83922 1.89033 1.81950 1.28270 1.33191 1.23291 0.98568 0.82261 0.97266 0.94793 0.92530 0.93120 0.91015 0.94194 0.91992 0.94431 0.93132 0.89546 0.89678 0.86995 0.92727 0.94236 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.59 71.98 0.62 -3.87 16 2 C -0.08 -3.06 2.54 -10.79 -0.03 -3.09 16 3 C -0.14 -5.12 8.75 71.98 0.63 -4.49 16 4 C 0.01 0.62 0.84 -11.54 -0.01 0.61 16 5 H 0.03 1.50 4.40 -2.39 -0.01 1.49 16 6 C -0.48 -24.92 6.23 25.60 0.16 -24.76 16 7 H 0.04 2.25 7.23 -2.91 -0.02 2.23 16 8 C 0.02 1.04 5.42 84.65 0.46 1.50 16 9 N -0.95 -58.41 13.96 21.45 0.30 -58.11 16 10 Si 0.91 43.17 27.11 68.60 1.86 45.03 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.24 -10.65 6.14 99.48 0.61 -10.03 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 14 C -0.10 -3.88 2.34 -9.78 -0.02 -3.91 16 15 H 0.07 2.64 6.54 -2.39 -0.02 2.62 16 16 C -0.15 -4.28 6.16 31.61 0.19 -4.08 16 17 C 0.04 1.11 7.64 72.49 0.55 1.66 16 18 O -0.40 -15.01 11.65 -148.98 -1.74 -16.75 16 19 C 0.06 2.54 6.65 72.48 0.48 3.03 16 20 H 0.03 1.38 6.84 -2.39 -0.02 1.37 16 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.68 6.36 -2.39 -0.02 1.67 16 23 H 0.07 2.19 6.54 -2.39 -0.02 2.17 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.63 7.15 -2.39 -0.02 1.62 16 27 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 2.28 6.57 -2.39 -0.02 2.27 16 30 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.73 7.85 -2.38 -0.02 1.71 16 33 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -61.02 253.02 4.43 -56.59 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.97 Total: 10.64 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.04 Total: -37.39 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.30 Total: -58.11 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -1.74 Total: -16.75 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.86 Total: 45.03 kcal Total: -61.02 4.43 -56.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616848.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.762 kcal (2) G-P(sol) polarization free energy of solvation -61.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds