Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.53002 * 109.47422 * 120.00497 * 2 1 3 5 5 H 1.08998 * 109.47106 * 186.42394 * 4 2 1 6 6 C 1.50696 * 109.47303 * 66.41783 * 4 2 1 7 7 H 1.07995 * 120.00100 * 245.64547 * 6 4 2 8 8 C 1.37875 * 119.99743 * 65.64845 * 6 4 2 9 9 N 1.31520 * 120.00131 * 12.59772 * 8 6 4 10 10 Si 1.86801 * 120.00173 * 192.59603 * 8 6 4 11 11 H 1.48500 * 109.47391 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.46997 * 59.99683 * 10 8 6 13 13 H 1.48501 * 109.47117 * 300.00150 * 10 8 6 14 14 C 1.53005 * 109.46710 * 306.41948 * 4 2 1 15 15 H 1.08990 * 110.75133 * 56.90708 * 14 4 2 16 16 C 1.55306 * 110.84624 * 180.38100 * 14 4 2 17 17 C 1.55206 * 100.82730 * 152.17817 * 16 14 4 18 18 O 1.43649 * 105.25860 * 323.81833 * 17 16 14 19 19 C 1.43237 * 109.97527 * 24.28401 * 18 17 16 20 20 H 1.09000 * 109.47419 * 304.03979 * 1 2 3 21 21 H 1.08997 * 109.47325 * 64.04301 * 1 2 3 22 22 H 1.09010 * 109.46936 * 184.04403 * 1 2 3 23 23 H 1.09008 * 109.47477 * 240.00395 * 2 1 3 24 24 H 1.09004 * 109.47575 * 166.23617 * 3 2 1 25 25 H 1.09001 * 109.47567 * 286.24612 * 3 2 1 26 26 H 1.09008 * 109.47021 * 46.24392 * 3 2 1 27 27 H 0.96995 * 119.99992 * 5.04255 * 9 8 6 28 28 H 1.08997 * 111.12523 * 270.24161 * 16 14 4 29 29 H 1.09000 * 111.12348 * 34.40554 * 16 14 4 30 30 H 1.09001 * 110.37064 * 204.79933 * 17 16 14 31 31 H 1.08997 * 110.20963 * 82.74925 * 17 16 14 32 32 H 1.09004 * 109.82710 * 238.77977 * 19 18 17 33 33 H 1.08998 * 109.90797 * 117.84429 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1239 -0.6228 1.3085 6 6 1.6716 -2.1806 1.1723 7 1 0.9731 -2.5993 1.8816 8 6 2.2264 -2.9811 0.1964 9 7 3.2511 -2.5482 -0.5053 10 14 1.5227 -4.6806 -0.1292 11 1 2.2909 -5.3339 -1.2193 12 1 0.0988 -4.5578 -0.5325 13 1 1.6187 -5.5008 1.1050 14 6 1.4026 -0.0993 2.4932 15 1 0.3152 -0.1376 2.4302 16 6 1.9066 -0.8027 3.7829 17 6 1.7709 0.3486 4.8149 18 8 2.1135 1.5437 4.0953 19 6 1.8905 1.3517 2.6935 20 1 -0.3634 0.5752 0.8516 21 1 -0.3634 0.4498 -0.9240 22 1 -0.3633 -1.0252 0.0725 23 1 1.8934 -0.5138 -0.8901 24 1 3.1022 1.4524 0.2445 25 1 1.8900 1.8809 -0.9866 26 1 1.4909 2.0220 0.7423 27 1 3.6628 -1.6972 -0.2881 28 1 1.2686 -1.6466 4.0450 29 1 2.9456 -1.1153 3.6794 30 1 2.4600 0.1966 5.6457 31 1 0.7458 0.4079 5.1804 32 1 2.8203 1.5080 2.1464 33 1 1.1315 2.0493 2.3394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219616927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -67.150869 kcal Electronic energy + Delta-G solvation = -13680.618550 eV Core-core repulsion = 11512.638612 eV Total energy + Delta-G solvation = -2167.979938 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20328 -36.18774 -32.25255 -31.32753 -28.57322 -27.07252 -25.82755 -23.08825 -21.68446 -20.37724 -18.62246 -16.89276 -15.97733 -15.13656 -14.29628 -13.78516 -13.67788 -13.31116 -13.12661 -12.81471 -12.15215 -11.85539 -11.34432 -11.15804 -10.81568 -10.72185 -10.57015 -10.40203 -10.12678 -10.05532 -9.90457 -9.58718 -9.10584 -8.98239 -8.48024 -8.18740 -6.33125 -4.01628 3.42844 3.44793 3.62888 4.43183 4.53788 5.28078 5.33487 5.48796 5.55346 5.66804 5.91652 5.97345 6.04390 6.08497 6.16694 6.30627 6.31157 6.40744 6.56261 6.61701 6.67031 6.72361 6.75943 6.93693 7.23037 7.27131 7.46672 7.56988 7.64003 8.25657 8.46654 8.89239 9.66394 11.03624 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036310 B = 0.013175 C = 0.011046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.951222 B = 2124.729743 C = 2534.354170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.159 4.159 4 C 0.053 3.947 5 H 0.020 0.980 6 C -0.589 4.589 7 H 0.048 0.952 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 1.055 2.945 11 H -0.284 1.284 12 H -0.289 1.289 13 H -0.290 1.290 14 C -0.102 4.102 15 H 0.073 0.927 16 C -0.134 4.134 17 C 0.046 3.954 18 O -0.399 6.399 19 C 0.046 3.954 20 H 0.037 0.963 21 H 0.028 0.972 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.271 0.729 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 4.496 4.634 7.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C -0.216 4.216 4 C 0.034 3.966 5 H 0.038 0.962 6 C -0.626 4.626 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.543 5.543 10 Si 0.884 3.116 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.216 1.216 14 C -0.120 4.120 15 H 0.091 0.909 16 C -0.171 4.171 17 C -0.030 4.030 18 O -0.319 6.319 19 C -0.029 4.029 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.522 3.356 3.729 6.130 hybrid contribution -0.292 1.097 0.845 1.415 sum -3.813 4.453 4.574 7.436 Atomic orbital electron populations 1.21722 0.96754 1.01733 0.98452 1.21234 0.94961 0.93269 1.02000 1.22340 1.00509 0.98675 1.00068 1.18817 0.94721 0.94889 0.88143 0.96163 1.21823 1.29251 0.93547 1.18028 0.93408 1.25638 0.94870 1.03871 0.93597 1.70773 1.19754 1.22959 1.40863 0.83754 0.75851 0.75689 0.76310 1.20947 1.21517 1.21622 1.22719 1.00453 0.91879 0.96987 0.90863 1.23154 1.02659 0.97226 0.94106 1.23432 0.99068 0.85159 0.95372 1.88315 1.88093 1.36222 1.19297 1.23861 1.00273 0.97790 0.81022 0.94372 0.95280 0.91787 0.91000 0.93445 0.94546 0.92723 0.91810 0.90533 0.90681 0.90829 0.93235 0.91011 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.40 37.16 0.31 -2.27 16 2 C -0.10 -2.08 2.47 -90.62 -0.22 -2.31 16 3 C -0.16 -2.95 7.67 37.16 0.29 -2.67 16 4 C 0.05 1.23 0.81 -91.77 -0.07 1.15 16 5 H 0.02 0.52 7.11 -51.93 -0.37 0.16 16 6 C -0.59 -15.33 6.88 -34.44 -0.24 -15.56 16 7 H 0.05 1.25 7.59 -52.49 -0.40 0.85 16 8 C 0.02 0.68 5.09 -17.82 -0.09 0.59 16 9 N -0.91 -26.30 12.85 55.43 0.71 -25.59 16 10 Si 1.06 24.46 29.92 -169.99 -5.09 19.37 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 C -0.10 -2.04 2.00 -88.67 -0.18 -2.22 16 15 H 0.07 1.47 6.33 -51.93 -0.33 1.14 16 16 C -0.13 -2.52 5.91 -24.34 -0.14 -2.66 16 17 C 0.05 0.76 7.78 38.33 0.30 1.06 16 18 O -0.40 -7.54 11.36 -35.23 -0.40 -7.94 16 19 C 0.05 0.86 5.45 37.88 0.21 1.06 16 20 H 0.04 0.69 6.47 -51.93 -0.34 0.36 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 1.38 7.31 -51.92 -0.38 1.00 16 23 H 0.07 1.80 6.74 -51.92 -0.35 1.45 16 24 H 0.05 0.88 7.15 -51.93 -0.37 0.51 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.93 4.78 -51.92 -0.25 0.68 16 27 H 0.27 7.84 6.63 -40.82 -0.27 7.57 16 28 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 29 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.37 5.82 -51.93 -0.30 1.06 16 33 H 0.06 1.03 6.62 -51.93 -0.34 0.68 16 LS Contribution 249.14 15.07 3.75 3.75 Total: -1.00 -27.92 249.14 -5.89 -33.80 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.02 Total: 0.42 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.71 Total: -25.59 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.40 Total: -7.94 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.37 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.92 -5.89 -33.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.349 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds