Wall clock time and date at job start Mon Mar 30 2020 02:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.53002 * 109.47422 * 120.00497 * 2 1 3 5 5 H 1.08998 * 109.47106 * 186.42394 * 4 2 1 6 6 C 1.50696 * 109.47303 * 66.41783 * 4 2 1 7 7 H 1.07995 * 120.00100 * 245.64547 * 6 4 2 8 8 C 1.37875 * 119.99743 * 65.64845 * 6 4 2 9 9 N 1.31520 * 120.00131 * 12.59772 * 8 6 4 10 10 Si 1.86801 * 120.00173 * 192.59603 * 8 6 4 11 11 H 1.48500 * 109.47391 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.46997 * 59.99683 * 10 8 6 13 13 H 1.48501 * 109.47117 * 300.00150 * 10 8 6 14 14 C 1.53005 * 109.46710 * 306.41948 * 4 2 1 15 15 H 1.08990 * 110.75133 * 56.90708 * 14 4 2 16 16 C 1.55306 * 110.84624 * 180.38100 * 14 4 2 17 17 C 1.55206 * 100.82730 * 152.17817 * 16 14 4 18 18 O 1.43649 * 105.25860 * 323.81833 * 17 16 14 19 19 C 1.43237 * 109.97527 * 24.28401 * 18 17 16 20 20 H 1.09000 * 109.47419 * 304.03979 * 1 2 3 21 21 H 1.08997 * 109.47325 * 64.04301 * 1 2 3 22 22 H 1.09010 * 109.46936 * 184.04403 * 1 2 3 23 23 H 1.09008 * 109.47477 * 240.00395 * 2 1 3 24 24 H 1.09004 * 109.47575 * 166.23617 * 3 2 1 25 25 H 1.09001 * 109.47567 * 286.24612 * 3 2 1 26 26 H 1.09008 * 109.47021 * 46.24392 * 3 2 1 27 27 H 0.96995 * 119.99992 * 5.04255 * 9 8 6 28 28 H 1.08997 * 111.12523 * 270.24161 * 16 14 4 29 29 H 1.09000 * 111.12348 * 34.40554 * 16 14 4 30 30 H 1.09001 * 110.37064 * 204.79933 * 17 16 14 31 31 H 1.08997 * 110.20963 * 82.74925 * 17 16 14 32 32 H 1.09004 * 109.82710 * 238.77977 * 19 18 17 33 33 H 1.08998 * 109.90797 * 117.84429 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1239 -0.6228 1.3085 6 6 1.6716 -2.1806 1.1723 7 1 0.9731 -2.5993 1.8816 8 6 2.2264 -2.9811 0.1964 9 7 3.2511 -2.5482 -0.5053 10 14 1.5227 -4.6806 -0.1292 11 1 2.2909 -5.3339 -1.2193 12 1 0.0988 -4.5578 -0.5325 13 1 1.6187 -5.5008 1.1050 14 6 1.4026 -0.0993 2.4932 15 1 0.3152 -0.1376 2.4302 16 6 1.9066 -0.8027 3.7829 17 6 1.7709 0.3486 4.8149 18 8 2.1135 1.5437 4.0953 19 6 1.8905 1.3517 2.6935 20 1 -0.3634 0.5752 0.8516 21 1 -0.3634 0.4498 -0.9240 22 1 -0.3633 -1.0252 0.0725 23 1 1.8934 -0.5138 -0.8901 24 1 3.1022 1.4524 0.2445 25 1 1.8900 1.8809 -0.9866 26 1 1.4909 2.0220 0.7423 27 1 3.6628 -1.6972 -0.2881 28 1 1.2686 -1.6466 4.0450 29 1 2.9456 -1.1153 3.6794 30 1 2.4600 0.1966 5.6457 31 1 0.7458 0.4079 5.1804 32 1 2.8203 1.5080 2.1464 33 1 1.1315 2.0493 2.3394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219616927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:21 Heat of formation + Delta-G solvation = -83.539545 kcal Electronic energy + Delta-G solvation = -13681.329216 eV Core-core repulsion = 11512.638612 eV Total energy + Delta-G solvation = -2168.690604 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75163 -37.86387 -34.24201 -32.89740 -30.04981 -28.80798 -27.51340 -25.05180 -23.11297 -21.97178 -20.40517 -18.77024 -17.51447 -16.71030 -15.77811 -15.61801 -15.30706 -15.01988 -14.90659 -14.36393 -13.83850 -13.53195 -12.83717 -12.82093 -12.62595 -12.35272 -12.13760 -12.04919 -11.95896 -11.65650 -11.57705 -11.33364 -10.82626 -10.44226 -10.41374 -10.21520 -8.49409 -6.16762 1.54306 1.60249 1.78566 2.61404 3.01509 3.26383 3.77345 3.90519 4.12232 4.28166 4.35403 4.43532 4.45472 4.49879 4.75397 4.80362 4.81713 4.89773 4.97273 5.03255 5.05888 5.14671 5.19218 5.30303 5.52064 5.56136 5.73876 5.83276 6.07458 6.22045 6.36252 6.76394 7.58193 8.87486 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036310 B = 0.013175 C = 0.011046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.951222 B = 2124.729743 C = 2534.354170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.096 4.096 3 C -0.150 4.150 4 C 0.053 3.947 5 H -0.015 1.015 6 C -0.586 4.586 7 H 0.045 0.955 8 C -0.025 4.025 9 N -0.937 5.937 10 Si 1.097 2.903 11 H -0.292 1.292 12 H -0.273 1.273 13 H -0.274 1.274 14 C -0.101 4.101 15 H 0.079 0.921 16 C -0.136 4.136 17 C 0.051 3.949 18 O -0.410 6.410 19 C 0.053 3.947 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.031 0.969 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.257 0.743 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 5.230 5.644 9.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.115 4.115 3 C -0.207 4.207 4 C 0.035 3.965 5 H 0.003 0.997 6 C -0.624 4.624 7 H 0.063 0.937 8 C -0.224 4.224 9 N -0.575 5.575 10 Si 0.921 3.079 11 H -0.218 1.218 12 H -0.199 1.199 13 H -0.200 1.200 14 C -0.120 4.120 15 H 0.098 0.902 16 C -0.174 4.174 17 C -0.025 4.025 18 O -0.331 6.331 19 C -0.023 4.023 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.087 4.101 4.760 8.084 hybrid contribution 0.206 0.872 0.570 1.062 sum -4.881 4.973 5.330 8.772 Atomic orbital electron populations 1.21642 0.94976 1.00951 1.00418 1.21126 0.96418 0.94712 0.99227 1.22235 1.00137 0.96653 1.01688 1.18737 0.92848 0.94171 0.90754 0.99703 1.22134 1.28038 0.95125 1.17146 0.93672 1.26846 0.94728 1.07001 0.93827 1.70884 1.21413 1.22807 1.42367 0.83194 0.75862 0.72329 0.76526 1.21782 1.19853 1.19950 1.22628 1.00393 0.93113 0.95837 0.90248 1.23124 1.01237 0.98378 0.94648 1.23548 1.01101 0.83019 0.94812 1.88300 1.88456 1.37109 1.19210 1.23764 1.00371 0.96891 0.81247 0.92247 0.93387 0.93960 0.95010 0.94283 0.93025 0.90589 0.93252 0.90171 0.92953 0.88734 0.90910 0.91937 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 8.40 71.98 0.60 -4.08 16 2 C -0.10 -4.15 2.47 -10.80 -0.03 -4.18 16 3 C -0.15 -5.38 7.67 71.98 0.55 -4.83 16 4 C 0.05 2.51 0.81 -11.54 -0.01 2.50 16 5 H -0.02 -0.81 7.11 -2.39 -0.02 -0.83 16 6 C -0.59 -30.83 6.88 25.60 0.18 -30.65 16 7 H 0.04 2.35 7.59 -2.91 -0.02 2.33 16 8 C -0.03 -1.41 5.09 84.65 0.43 -0.98 16 9 N -0.94 -56.05 12.85 21.45 0.28 -55.78 16 10 Si 1.10 49.44 29.92 68.60 2.05 51.49 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 C -0.10 -3.92 2.00 -9.53 -0.02 -3.94 16 15 H 0.08 2.99 6.33 -2.39 -0.02 2.98 16 16 C -0.14 -4.96 5.91 32.14 0.19 -4.77 16 17 C 0.05 1.54 7.78 72.74 0.57 2.11 16 18 O -0.41 -14.39 11.36 -148.98 -1.69 -16.08 16 19 C 0.05 1.85 5.45 72.45 0.39 2.24 16 20 H 0.06 1.99 6.47 -2.39 -0.02 1.97 16 21 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.77 7.31 -2.38 -0.02 1.75 16 23 H 0.03 1.62 6.74 -2.38 -0.02 1.61 16 24 H 0.04 1.44 7.15 -2.38 -0.02 1.42 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 2.38 4.78 -2.38 -0.01 2.37 16 27 H 0.26 15.65 6.63 -92.71 -0.61 15.04 16 28 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 29 H 0.05 2.12 8.04 -2.39 -0.02 2.10 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.31 5.82 -2.39 -0.01 2.30 16 33 H 0.08 2.47 6.62 -2.39 -0.02 2.46 16 Total: -1.00 -60.20 249.14 4.72 -55.48 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.23 Total: 11.47 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 2.86 Total: -46.58 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -1.69 Total: -16.08 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -60.20 4.72 -55.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219616927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.063 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds