Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.01392 * 2 1 4 4 C 1.54262 * 110.02944 * 238.55832 * 2 1 3 5 5 C 1.54888 * 104.19540 * 217.10309 * 4 2 1 6 6 C 1.53004 * 110.75478 * 156.25793 * 5 4 2 7 7 C 1.52997 * 110.75720 * 279.44440 * 5 4 2 8 8 C 1.54890 * 102.74919 * 37.94557 * 5 4 2 9 9 C 1.53872 * 110.03228 * 121.39315 * 2 1 3 10 10 O 1.42896 * 110.03056 * 238.61727 * 9 2 1 11 11 C 1.50701 * 110.03182 * 359.97438 * 9 2 1 12 12 H 1.07998 * 120.00098 * 354.83392 * 11 9 2 13 13 C 1.37882 * 119.99930 * 174.83356 * 11 9 2 14 14 N 1.31511 * 120.00205 * 163.11228 * 13 11 9 15 15 Si 1.86800 * 119.99754 * 343.11496 * 13 11 9 16 16 H 1.48506 * 109.46955 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47217 * 59.99951 * 15 13 11 18 18 H 1.48501 * 109.47069 * 299.99462 * 15 13 11 19 19 H 1.08995 * 109.46861 * 298.60825 * 1 2 3 20 20 H 1.08998 * 109.47042 * 58.60518 * 1 2 3 21 21 H 1.09001 * 109.47092 * 178.61110 * 1 2 3 22 22 H 1.09000 * 110.49130 * 335.78357 * 4 2 1 23 23 H 1.09005 * 110.48827 * 98.29244 * 4 2 1 24 24 H 1.08992 * 109.47335 * 61.45662 * 6 5 4 25 25 H 1.09005 * 109.46995 * 181.46026 * 6 5 4 26 26 H 1.09001 * 109.47238 * 301.45123 * 6 5 4 27 27 H 1.08998 * 109.47273 * 58.54810 * 7 5 4 28 28 H 1.09010 * 109.46717 * 178.54490 * 7 5 4 29 29 H 1.08991 * 109.47318 * 298.54442 * 7 5 4 30 30 H 1.08991 * 110.48989 * 203.38050 * 8 5 4 31 31 H 1.09001 * 110.48961 * 80.73064 * 8 5 4 32 32 H 0.96707 * 114.00301 * 174.84351 * 10 9 2 33 33 H 0.97002 * 119.99689 * 354.90121 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 3.3137 -1.5010 -0.7185 6 6 3.6208 -2.7186 -1.5927 7 6 4.5182 -0.5593 -0.6616 8 6 2.8875 -1.9404 0.7043 9 6 2.0572 -0.7530 1.2340 10 8 2.8817 0.1105 2.0191 11 6 0.9038 -1.2578 2.0623 12 1 -0.1090 -0.9953 1.7945 13 6 1.1416 -2.0547 3.1621 14 7 0.2028 -2.2232 4.0675 15 14 2.7974 -2.8951 3.3660 16 1 2.7983 -3.6891 4.6210 17 1 3.8690 -1.8689 3.4281 18 1 3.0409 -3.7959 2.2108 19 1 -0.3633 0.4920 0.9022 20 1 -0.3633 0.5353 -0.8772 21 1 -0.3633 -1.0274 -0.0249 22 1 1.3143 -1.4667 -1.5960 23 1 2.3275 -0.0546 -2.0264 24 1 3.8278 -2.3914 -2.6116 25 1 4.4908 -3.2412 -1.1951 26 1 2.7627 -3.3907 -1.5941 27 1 4.2897 0.2838 -0.0096 28 1 5.3818 -1.0974 -0.2706 29 1 4.7412 -0.1936 -1.6638 30 1 3.7637 -2.1031 1.3318 31 1 2.2772 -2.8423 0.6584 32 1 3.1807 -0.2807 2.8514 33 1 -0.6295 -1.7294 4.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235342209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = -63.014222 kcal Electronic energy + Delta-G solvation = -13990.904020 eV Core-core repulsion = 11823.103460 eV Total energy + Delta-G solvation = -2167.800559 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.05705 -34.81049 -32.64439 -32.02072 -28.26927 -26.90162 -26.31478 -24.00458 -22.36178 -19.04451 -18.18472 -17.14026 -15.38754 -14.94860 -14.23371 -13.84359 -13.45968 -13.21305 -12.87369 -12.33755 -11.84572 -11.74244 -11.35703 -11.16142 -11.05824 -10.81300 -10.67987 -10.49644 -10.08588 -9.89452 -9.80029 -9.56426 -9.25758 -8.89144 -8.68086 -7.96665 -6.47165 -4.17292 3.25236 3.36997 3.54206 4.39448 5.07876 5.17956 5.36343 5.39801 5.64401 5.92463 5.98851 6.00752 6.05808 6.16218 6.21019 6.29285 6.38818 6.46286 6.54002 6.60505 6.66739 6.73864 6.75997 6.96272 7.08017 7.15223 7.19399 7.34389 8.03577 8.33484 8.83552 9.06920 9.54509 10.85648 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.017983 C = 0.014599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.458231 B = 1556.661547 C = 1917.506700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.069 4.069 3 H 0.061 0.939 4 C -0.105 4.105 5 C -0.071 4.071 6 C -0.136 4.136 7 C -0.134 4.134 8 C -0.150 4.150 9 C 0.223 3.777 10 O -0.588 6.588 11 C -0.622 4.622 12 H 0.081 0.919 13 C 0.031 3.969 14 N -0.899 5.899 15 Si 1.044 2.956 16 H -0.293 1.293 17 H -0.285 1.285 18 H -0.278 1.278 19 H 0.057 0.943 20 H 0.025 0.975 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.357 0.643 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 0.723 -8.712 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.142 4.142 5 C -0.071 4.071 6 C -0.193 4.193 7 C -0.191 4.191 8 C -0.187 4.187 9 C 0.183 3.817 10 O -0.397 6.397 11 C -0.660 4.660 12 H 0.099 0.901 13 C -0.175 4.175 14 N -0.533 5.533 15 Si 0.875 3.125 16 H -0.220 1.220 17 H -0.213 1.213 18 H -0.204 1.204 19 H 0.076 0.924 20 H 0.044 0.956 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.206 0.794 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.501 0.068 -8.259 10.511 hybrid contribution -0.727 0.578 -0.455 1.034 sum 5.773 0.645 -8.714 10.473 Atomic orbital electron populations 1.21797 0.95434 1.01411 0.99205 1.21424 0.95318 0.98536 0.93494 0.92094 1.22463 0.96467 0.98309 0.96973 1.21462 0.94913 0.94726 0.96005 1.21795 1.01103 0.97677 0.98717 1.21751 0.96661 1.00000 1.00686 1.23667 0.99000 1.01351 0.94726 1.19622 0.87973 0.85424 0.88659 1.86372 1.71062 1.46903 1.35318 1.22948 0.94772 1.35153 1.13090 0.90110 1.25783 1.03954 0.95679 0.92079 1.70806 1.07801 1.41759 1.32917 0.84272 0.75227 0.77260 0.75734 1.22043 1.21256 1.20382 0.92391 0.95580 0.92237 0.91960 0.92934 0.93431 0.93269 0.92784 0.91186 0.93598 0.93828 0.93277 0.90586 0.79415 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 7.55 37.16 0.28 -2.21 16 2 C -0.07 -1.46 2.95 -89.50 -0.26 -1.72 16 3 H 0.06 1.30 7.95 -51.93 -0.41 0.88 16 4 C -0.10 -1.89 5.29 -25.08 -0.13 -2.02 16 5 C -0.07 -1.28 0.93 -152.51 -0.14 -1.42 16 6 C -0.14 -2.09 8.63 37.16 0.32 -1.77 16 7 C -0.13 -2.24 8.52 37.16 0.32 -1.93 16 8 C -0.15 -3.25 2.67 -25.07 -0.07 -3.32 16 9 C 0.22 5.29 0.70 -90.65 -0.06 5.23 16 10 O -0.59 -14.37 11.98 -35.23 -0.42 -14.79 16 11 C -0.62 -16.93 7.68 -34.44 -0.26 -17.20 16 12 H 0.08 2.30 4.93 -52.49 -0.26 2.04 16 13 C 0.03 0.87 5.35 -17.82 -0.10 0.77 16 14 N -0.90 -27.04 13.70 55.43 0.76 -26.28 16 15 Si 1.04 24.83 23.19 -169.99 -3.94 20.89 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.28 -6.25 5.78 56.52 0.33 -5.92 16 18 H -0.28 -6.22 5.99 56.52 0.34 -5.88 16 19 H 0.06 1.28 7.02 -51.93 -0.36 0.92 16 20 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 21 H 0.06 1.27 7.17 -51.93 -0.37 0.90 16 22 H 0.06 1.10 7.74 -51.93 -0.40 0.69 16 23 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.07 1.30 6.69 -51.93 -0.35 0.95 16 28 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.06 5.29 -51.93 -0.27 0.79 16 31 H 0.08 1.74 6.51 -51.93 -0.34 1.40 16 32 H 0.36 8.51 5.79 45.56 0.26 8.77 16 33 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 LS Contribution 242.70 15.07 3.66 3.66 Total: -1.00 -28.89 242.70 -4.81 -33.70 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.75 Total: 8.41 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -0.11 Total: -25.59 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.76 Total: -26.28 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.42 Total: -14.79 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -3.94 Total: 20.89 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.89 -4.81 -33.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235342209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.313 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds