Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.01392 * 2 1 4 4 C 1.54262 * 110.02944 * 238.55832 * 2 1 3 5 5 C 1.54888 * 104.19540 * 217.10309 * 4 2 1 6 6 C 1.53004 * 110.75478 * 156.25793 * 5 4 2 7 7 C 1.52997 * 110.75720 * 279.44440 * 5 4 2 8 8 C 1.54890 * 102.74919 * 37.94557 * 5 4 2 9 9 C 1.53872 * 110.03228 * 121.39315 * 2 1 3 10 10 O 1.42896 * 110.03056 * 238.61727 * 9 2 1 11 11 C 1.50701 * 110.03182 * 359.97438 * 9 2 1 12 12 H 1.07998 * 120.00098 * 354.83392 * 11 9 2 13 13 C 1.37882 * 119.99930 * 174.83356 * 11 9 2 14 14 N 1.31511 * 120.00205 * 163.11228 * 13 11 9 15 15 Si 1.86800 * 119.99754 * 343.11496 * 13 11 9 16 16 H 1.48506 * 109.46955 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47217 * 59.99951 * 15 13 11 18 18 H 1.48501 * 109.47069 * 299.99462 * 15 13 11 19 19 H 1.08995 * 109.46861 * 298.60825 * 1 2 3 20 20 H 1.08998 * 109.47042 * 58.60518 * 1 2 3 21 21 H 1.09001 * 109.47092 * 178.61110 * 1 2 3 22 22 H 1.09000 * 110.49130 * 335.78357 * 4 2 1 23 23 H 1.09005 * 110.48827 * 98.29244 * 4 2 1 24 24 H 1.08992 * 109.47335 * 61.45662 * 6 5 4 25 25 H 1.09005 * 109.46995 * 181.46026 * 6 5 4 26 26 H 1.09001 * 109.47238 * 301.45123 * 6 5 4 27 27 H 1.08998 * 109.47273 * 58.54810 * 7 5 4 28 28 H 1.09010 * 109.46717 * 178.54490 * 7 5 4 29 29 H 1.08991 * 109.47318 * 298.54442 * 7 5 4 30 30 H 1.08991 * 110.48989 * 203.38050 * 8 5 4 31 31 H 1.09001 * 110.48961 * 80.73064 * 8 5 4 32 32 H 0.96707 * 114.00301 * 174.84351 * 10 9 2 33 33 H 0.97002 * 119.99689 * 354.90121 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7560 -1.2365 5 6 3.3137 -1.5010 -0.7185 6 6 3.6208 -2.7186 -1.5927 7 6 4.5182 -0.5593 -0.6616 8 6 2.8875 -1.9404 0.7043 9 6 2.0572 -0.7530 1.2340 10 8 2.8817 0.1105 2.0191 11 6 0.9038 -1.2578 2.0623 12 1 -0.1090 -0.9953 1.7945 13 6 1.1416 -2.0547 3.1621 14 7 0.2028 -2.2232 4.0675 15 14 2.7974 -2.8951 3.3660 16 1 2.7983 -3.6891 4.6210 17 1 3.8690 -1.8689 3.4281 18 1 3.0409 -3.7959 2.2108 19 1 -0.3633 0.4920 0.9022 20 1 -0.3633 0.5353 -0.8772 21 1 -0.3633 -1.0274 -0.0249 22 1 1.3143 -1.4667 -1.5960 23 1 2.3275 -0.0546 -2.0264 24 1 3.8278 -2.3914 -2.6116 25 1 4.4908 -3.2412 -1.1951 26 1 2.7627 -3.3907 -1.5941 27 1 4.2897 0.2838 -0.0096 28 1 5.3818 -1.0974 -0.2706 29 1 4.7412 -0.1936 -1.6638 30 1 3.7637 -2.1031 1.3318 31 1 2.2772 -2.8423 0.6584 32 1 3.1807 -0.2807 2.8514 33 1 -0.6295 -1.7294 4.0008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235342209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = -83.289574 kcal Electronic energy + Delta-G solvation = -13991.783225 eV Core-core repulsion = 11823.103460 eV Total energy + Delta-G solvation = -2168.679765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71272 -36.55456 -34.62563 -33.82128 -30.06417 -28.17634 -27.82062 -25.90141 -24.10952 -20.86165 -19.74743 -19.10980 -17.25367 -16.67687 -15.94651 -15.37350 -15.13356 -14.98980 -14.47510 -13.83422 -13.46627 -13.22204 -12.98320 -12.72366 -12.66747 -12.46820 -12.24108 -12.19107 -11.79832 -11.70944 -11.32531 -11.09980 -11.00030 -10.78250 -10.66417 -9.97552 -8.70241 -6.41158 1.35145 1.45423 1.64335 2.41765 2.99740 3.63982 3.78240 3.88322 4.12061 4.47622 4.48937 4.52464 4.66369 4.71438 4.81888 4.87848 4.92406 4.99470 5.06532 5.12557 5.18139 5.28807 5.30992 5.41426 5.45168 5.54978 5.57585 5.71989 6.04368 6.05138 6.58155 7.14727 7.39358 8.60759 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034078 B = 0.017983 C = 0.014599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.458231 B = 1556.661547 C = 1917.506700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.059 0.941 4 C -0.098 4.098 5 C -0.069 4.069 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.151 4.151 9 C 0.213 3.787 10 O -0.593 6.593 11 C -0.625 4.625 12 H 0.054 0.946 13 C -0.018 4.018 14 N -0.935 5.935 15 Si 1.079 2.921 16 H -0.304 1.304 17 H -0.256 1.256 18 H -0.254 1.254 19 H 0.027 0.973 20 H 0.060 0.940 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.358 0.642 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 0.618 -11.037 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.135 4.135 5 C -0.069 4.069 6 C -0.190 4.190 7 C -0.188 4.188 8 C -0.189 4.189 9 C 0.174 3.826 10 O -0.401 6.401 11 C -0.662 4.662 12 H 0.072 0.928 13 C -0.217 4.217 14 N -0.571 5.571 15 Si 0.903 3.097 16 H -0.232 1.232 17 H -0.181 1.181 18 H -0.178 1.178 19 H 0.046 0.954 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.206 0.794 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.712 -0.018 -10.613 13.731 hybrid contribution -1.515 0.689 0.263 1.685 sum 7.197 0.671 -10.350 12.625 Atomic orbital electron populations 1.21673 0.95572 1.00472 0.99341 1.21509 0.95245 0.98622 0.93996 0.92271 1.22448 0.96500 0.98592 0.95995 1.21498 0.95397 0.96157 0.93822 1.21765 1.01315 0.96303 0.99595 1.21726 0.96214 0.98934 1.01965 1.23530 0.98341 0.99428 0.97568 1.19791 0.87174 0.86725 0.88957 1.86374 1.70922 1.47294 1.35487 1.23259 0.95213 1.34350 1.13401 0.92760 1.27076 1.06415 0.96286 0.91893 1.70939 1.08128 1.43349 1.34712 0.83871 0.72372 0.77475 0.75960 1.23187 1.18122 1.17847 0.95367 0.92094 0.93876 0.91645 0.90028 0.90775 0.92409 0.93235 0.93421 0.92677 0.91037 0.93003 0.92222 0.79400 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 7.55 71.98 0.54 -4.08 16 2 C -0.08 -3.06 2.95 -10.07 -0.03 -3.09 16 3 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 4 C -0.10 -3.19 5.29 31.67 0.17 -3.02 16 5 C -0.07 -2.22 0.93 -50.89 -0.05 -2.27 16 6 C -0.13 -3.49 8.63 71.98 0.62 -2.87 16 7 C -0.13 -3.84 8.52 71.98 0.61 -3.23 16 8 C -0.15 -6.21 2.67 31.67 0.08 -6.13 16 9 C 0.21 9.94 0.70 -10.82 -0.01 9.93 16 10 O -0.59 -28.38 11.98 -148.98 -1.78 -30.16 16 11 C -0.62 -34.74 7.68 25.60 0.20 -34.54 16 12 H 0.05 3.24 4.93 -2.91 -0.01 3.23 16 13 C -0.02 -1.02 5.35 84.66 0.45 -0.57 16 14 N -0.94 -58.31 13.70 21.45 0.29 -58.02 16 15 Si 1.08 49.66 23.19 68.60 1.59 51.25 16 16 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 17 H -0.26 -10.45 5.78 99.48 0.58 -9.87 16 18 H -0.25 -10.66 5.99 99.48 0.60 -10.06 16 19 H 0.03 1.27 7.02 -2.39 -0.02 1.25 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.04 1.86 7.17 -2.39 -0.02 1.84 16 22 H 0.06 2.09 7.74 -2.39 -0.02 2.07 16 23 H 0.08 2.22 8.06 -2.38 -0.02 2.20 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 26 H 0.05 1.34 8.12 -2.39 -0.02 1.32 16 27 H 0.05 1.61 6.69 -2.39 -0.02 1.59 16 28 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 2.09 5.29 -2.39 -0.01 2.07 16 31 H 0.06 2.63 6.51 -2.39 -0.02 2.61 16 32 H 0.36 16.65 5.79 -74.05 -0.43 16.22 16 33 H 0.25 16.09 8.73 -92.71 -0.81 15.29 16 Total: -1.00 -63.36 242.70 3.07 -60.29 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.37 Total: 26.50 kcal Atomic # 6 Polarization: -52.45 SS G_CDS: 2.59 Total: -49.86 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.29 Total: -58.02 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.78 Total: -30.16 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.59 Total: 51.25 kcal Total: -63.36 3.07 -60.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235342209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.999 kcal (2) G-P(sol) polarization free energy of solvation -63.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds