Wall clock time and date at job start Mon Mar 30 2020 02:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.01797 * 2 1 4 4 C 1.54266 * 110.07394 * 121.41929 * 2 1 3 5 5 C 1.54885 * 104.19741 * 142.91608 * 4 2 1 6 6 C 1.52995 * 110.75583 * 203.74364 * 5 4 2 7 7 C 1.52999 * 110.75812 * 80.37214 * 5 4 2 8 8 C 1.54888 * 102.74932 * 322.05670 * 5 4 2 9 9 C 1.53873 * 110.03228 * 238.61009 * 2 1 3 10 10 O 1.42901 * 110.03358 * 121.38071 * 9 2 1 11 11 C 1.50700 * 110.03385 * 359.97438 * 9 2 1 12 12 H 1.08006 * 119.99584 * 0.02562 * 11 9 2 13 13 C 1.37878 * 120.00471 * 180.02562 * 11 9 2 14 14 N 1.31517 * 119.99560 * 359.97438 * 13 11 9 15 15 Si 1.86791 * 120.00116 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47479 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47271 * 120.00009 * 15 13 11 18 18 H 1.48499 * 109.47372 * 239.99770 * 15 13 11 19 19 H 1.09003 * 109.46988 * 180.70354 * 1 2 3 20 20 H 1.09004 * 109.46758 * 300.70011 * 1 2 3 21 21 H 1.08999 * 109.47296 * 60.69927 * 1 2 3 22 22 H 1.08997 * 110.48660 * 261.59676 * 4 2 1 23 23 H 1.09009 * 110.48346 * 24.23482 * 4 2 1 24 24 H 1.09005 * 109.47160 * 173.32886 * 6 5 4 25 25 H 1.08997 * 109.47381 * 293.32573 * 6 5 4 26 26 H 1.08999 * 109.47576 * 53.33123 * 6 5 4 27 27 H 1.09005 * 109.46773 * 306.67574 * 7 5 4 28 28 H 1.08995 * 109.46958 * 66.66818 * 7 5 4 29 29 H 1.08993 * 109.47267 * 186.67476 * 7 5 4 30 30 H 1.08998 * 110.48749 * 279.26537 * 8 5 4 31 31 H 1.09000 * 110.60155 * 156.67434 * 8 5 4 32 32 H 0.96701 * 114.00150 * 180.02562 * 10 9 2 33 33 H 0.97000 * 119.99626 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0595 -0.7553 1.2365 5 6 3.3150 -1.4996 0.7181 6 6 3.6234 -2.7167 1.5925 7 6 4.5178 -0.5560 0.6560 8 6 2.8885 -1.9397 -0.7044 9 6 2.0571 -0.7530 -1.2341 10 8 2.8816 0.1106 -2.0192 11 6 0.9038 -1.2588 -2.0618 12 1 -0.1115 -1.0669 -1.7474 13 6 1.1447 -1.9664 -3.2203 14 7 2.3811 -2.1996 -3.6033 15 14 -0.2849 -2.5939 -4.2458 16 1 -1.5648 -2.2026 -3.6027 17 1 -0.2139 -2.0046 -5.6071 18 1 -0.2125 -4.0739 -4.3429 19 1 -0.3633 -1.0276 0.0126 20 1 -0.3633 0.5247 0.8837 21 1 -0.3634 0.5029 -0.8962 22 1 2.3306 -0.0534 2.0251 23 1 1.3159 -1.4664 1.5965 24 1 4.4344 -3.2904 1.1437 25 1 3.9207 -2.3838 2.5868 26 1 2.7347 -3.3432 1.6697 27 1 4.2550 0.3299 0.0778 28 1 4.7998 -0.2600 1.6664 29 1 5.3552 -1.0657 0.1796 30 1 2.2788 -2.8420 -0.6579 31 1 3.7634 -2.1035 -1.3336 32 1 3.2445 -0.3064 -2.8127 33 1 2.5506 -2.6971 -4.4186 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235562541.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:14 Heat of formation + Delta-G solvation = -90.316639 kcal Electronic energy + Delta-G solvation = -13876.456517 eV Core-core repulsion = 11707.472036 eV Total energy + Delta-G solvation = -2168.984481 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.40554 -36.29539 -34.10067 -33.75868 -29.40203 -28.19214 -27.87189 -26.17471 -23.94730 -20.41736 -19.62007 -18.40778 -16.89827 -16.50127 -15.74485 -15.41349 -15.05547 -14.37149 -14.15726 -13.79844 -13.40588 -13.15601 -12.96001 -12.87909 -12.64542 -12.38689 -12.21743 -12.15235 -11.80597 -11.61708 -11.25983 -11.22246 -10.96406 -10.78209 -10.40845 -9.78093 -8.12142 -6.23878 1.38071 1.41845 1.51445 2.42414 3.12158 3.85045 4.00970 4.05684 4.29337 4.59275 4.61803 4.75856 4.78860 4.86660 4.93981 5.03087 5.04806 5.10629 5.19523 5.25572 5.31230 5.38906 5.45165 5.58683 5.62962 5.72003 5.80458 5.82158 5.97588 6.34642 6.84072 7.46959 7.60001 8.92999 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.013766 C = 0.012697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.857589 B = 2033.488925 C = 2204.788453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 H 0.051 0.949 4 C -0.097 4.097 5 C -0.080 4.080 6 C -0.128 4.128 7 C -0.124 4.124 8 C -0.094 4.094 9 C 0.235 3.765 10 O -0.602 6.602 11 C -0.557 4.557 12 H 0.077 0.923 13 C 0.020 3.980 14 N -0.920 5.920 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.285 1.285 18 H -0.283 1.283 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.370 0.630 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 0.402 8.348 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.102 4.102 3 H 0.069 0.931 4 C -0.134 4.134 5 C -0.080 4.080 6 C -0.185 4.185 7 C -0.181 4.181 8 C -0.132 4.132 9 C 0.196 3.804 10 O -0.410 6.410 11 C -0.595 4.595 12 H 0.094 0.906 13 C -0.178 4.178 14 N -0.561 5.561 15 Si 0.777 3.223 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.209 1.209 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.219 0.781 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.274 0.746 8.694 8.730 hybrid contribution -0.410 -0.904 -1.693 1.963 sum -0.136 -0.159 7.000 7.004 Atomic orbital electron populations 1.21719 0.94829 1.00994 0.99869 1.21633 0.95945 0.98254 0.94417 0.93076 1.22424 0.96348 0.98487 0.96139 1.21622 0.95272 0.95883 0.95250 1.21708 1.00975 0.96535 0.99274 1.21638 0.96398 0.98835 1.01240 1.22677 0.97911 0.98347 0.94312 1.19534 0.87155 0.85904 0.87811 1.86098 1.69426 1.44554 1.40967 1.22648 0.95179 1.33638 1.07999 0.90556 1.25744 0.97770 0.95684 0.98641 1.69785 1.19899 1.42042 1.24421 0.85626 0.80356 0.77743 0.78577 1.19242 1.21079 1.20884 0.93076 0.92283 0.94261 0.90649 0.91460 0.93414 0.91023 0.93089 0.93807 0.91268 0.93858 0.94866 0.95090 0.78096 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 7.54 71.98 0.54 -4.01 16 2 C -0.08 -3.53 2.88 -10.07 -0.03 -3.56 16 3 H 0.05 2.20 7.95 -2.39 -0.02 2.19 16 4 C -0.10 -3.38 5.29 31.67 0.17 -3.22 16 5 C -0.08 -2.95 0.93 -50.89 -0.05 -2.99 16 6 C -0.13 -3.88 8.64 71.98 0.62 -3.26 16 7 C -0.12 -4.29 8.50 71.98 0.61 -3.68 16 8 C -0.09 -4.42 4.10 31.67 0.13 -4.30 16 9 C 0.23 11.72 0.72 -10.81 -0.01 11.72 16 10 O -0.60 -32.46 12.09 -148.98 -1.80 -34.26 16 11 C -0.56 -29.96 7.21 25.60 0.18 -29.77 16 12 H 0.08 4.00 4.66 -2.91 -0.01 3.99 16 13 C 0.02 1.09 5.24 84.65 0.44 1.54 16 14 N -0.92 -51.14 10.72 21.45 0.23 -50.91 16 15 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H 0.05 2.04 7.04 -2.39 -0.02 2.02 16 20 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 21 H 0.04 1.63 7.16 -2.39 -0.02 1.61 16 22 H 0.07 2.25 8.06 -2.39 -0.02 2.23 16 23 H 0.07 2.24 7.72 -2.38 -0.02 2.23 16 24 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.53 8.09 -2.39 -0.02 1.52 16 27 H 0.04 1.71 6.78 -2.38 -0.02 1.69 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.03 1.66 7.75 -2.39 -0.02 1.64 16 31 H 0.03 1.58 7.81 -2.39 -0.02 1.56 16 32 H 0.37 20.82 7.08 -74.06 -0.52 20.30 16 33 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -57.74 253.85 3.63 -54.11 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.55 Total: 27.20 kcal Atomic # 6 Polarization: -44.15 SS G_CDS: 2.62 Total: -41.53 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.23 Total: -50.91 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.80 Total: -34.26 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -57.74 3.63 -54.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235562541.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.207 kcal (2) G-P(sol) polarization free energy of solvation -57.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds