Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.43388 * 2 1 4 4 C 1.54277 * 110.48257 * 122.53821 * 2 1 3 5 5 C 1.53875 * 106.59531 * 142.42363 * 4 2 1 6 6 C 1.53003 * 110.02944 * 240.71487 * 5 4 2 7 7 C 1.52992 * 110.07473 * 119.30692 * 5 4 2 8 8 C 1.54269 * 106.59939 * 359.97438 * 5 4 2 9 9 C 1.54886 * 104.31300 * 336.32597 * 8 5 4 10 10 O 1.42900 * 110.75982 * 279.69307 * 9 8 5 11 11 C 1.50700 * 110.75580 * 156.31992 * 9 8 5 12 12 H 1.08001 * 120.00639 * 274.18718 * 11 9 8 13 13 C 1.37883 * 119.99818 * 94.18615 * 11 9 8 14 14 N 1.31513 * 120.00014 * 163.31986 * 13 11 9 15 15 Si 1.86798 * 120.00025 * 343.32580 * 13 11 9 16 16 H 1.48500 * 109.47217 * 95.56372 * 15 13 11 17 17 H 1.48500 * 109.47095 * 215.56271 * 15 13 11 18 18 H 1.48497 * 109.47171 * 335.56300 * 15 13 11 19 19 H 1.09007 * 109.47324 * 298.91311 * 1 2 3 20 20 H 1.08999 * 109.47081 * 58.91499 * 1 2 3 21 21 H 1.09003 * 109.47353 * 178.92063 * 1 2 3 22 22 H 1.08996 * 110.03280 * 23.13344 * 4 2 1 23 23 H 1.09006 * 110.06900 * 261.72594 * 4 2 1 24 24 H 1.08994 * 109.47034 * 177.16494 * 6 5 4 25 25 H 1.09005 * 109.46868 * 297.16597 * 6 5 4 26 26 H 1.09001 * 109.47231 * 57.16524 * 6 5 4 27 27 H 1.08999 * 109.47013 * 302.80381 * 7 5 4 28 28 H 1.08999 * 109.47358 * 62.80648 * 7 5 4 29 29 H 1.09000 * 109.46932 * 182.80852 * 7 5 4 30 30 H 1.09001 * 110.48340 * 95.06954 * 8 5 4 31 31 H 1.09000 * 110.48829 * 217.57982 * 8 5 4 32 32 H 0.96698 * 114.00004 * 298.85692 * 10 9 8 33 33 H 0.96996 * 120.00561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7773 1.2184 5 6 3.3185 -1.5369 0.7370 6 6 3.1142 -3.0434 0.9091 7 6 4.5472 -1.0814 1.5267 8 6 3.4934 -1.1952 -0.7572 9 6 2.0753 -0.7835 -1.2244 10 8 1.2735 -1.9371 -1.4863 11 6 2.1502 0.1039 -2.4401 12 1 2.2818 1.1695 -2.3237 13 6 2.0506 -0.4446 -3.7012 14 7 1.7867 0.3253 -4.7342 15 14 2.2903 -2.2814 -3.9424 16 1 0.9680 -2.9573 -3.9432 17 1 2.9717 -2.5256 -5.2390 18 1 3.1216 -2.8215 -2.8368 19 1 -0.3634 0.4969 0.8996 20 1 -0.3633 0.5306 -0.8801 21 1 -0.3634 -1.0275 -0.0194 22 1 1.3184 -1.4819 1.5746 23 1 2.3388 -0.0839 2.0153 24 1 3.9824 -3.5747 0.5194 25 1 2.9914 -3.2749 1.9673 26 1 2.2231 -3.3540 0.3635 27 1 4.6700 -0.0039 1.4179 28 1 4.4138 -1.3274 2.5801 29 1 5.4331 -1.5885 1.1445 30 1 4.1910 -0.3667 -0.8798 31 1 3.8388 -2.0686 -1.3104 32 1 1.6214 -2.5074 -2.1854 33 1 1.7163 -0.0605 -5.6213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235609509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -57.983087 kcal Electronic energy + Delta-G solvation = -13911.564314 eV Core-core repulsion = 11743.981921 eV Total energy + Delta-G solvation = -2167.582393 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99420 -35.08200 -32.30746 -32.10358 -28.59800 -26.85404 -26.06084 -24.80819 -21.93976 -19.14230 -18.15428 -17.09958 -16.08478 -14.53795 -14.21397 -13.67128 -13.39755 -12.94396 -12.71891 -12.53107 -12.33845 -12.08325 -11.55863 -11.34642 -11.07632 -10.87869 -10.68775 -10.24753 -10.14841 -9.93738 -9.80697 -9.62626 -9.59008 -9.13340 -8.74321 -8.14116 -6.21811 -4.14821 3.12600 3.17352 3.30572 4.24918 4.93953 5.27082 5.32917 5.40459 5.55479 5.89238 5.94940 6.00010 6.05199 6.17931 6.20549 6.30625 6.37189 6.47120 6.51496 6.60150 6.66459 6.76152 6.86324 6.95593 7.05110 7.15790 7.26896 7.35088 7.67534 8.27190 8.75168 8.86705 9.45010 10.92015 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.015808 C = 0.013870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.369439 B = 1770.863056 C = 2018.305842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.072 4.072 6 C -0.135 4.135 7 C -0.135 4.135 8 C -0.145 4.145 9 C 0.227 3.773 10 O -0.558 6.558 11 C -0.535 4.535 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.883 5.883 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.296 1.296 18 H -0.262 1.262 19 H 0.031 0.969 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.339 0.661 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 -4.481 9.485 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.072 4.072 6 C -0.193 4.193 7 C -0.192 4.192 8 C -0.183 4.183 9 C 0.188 3.812 10 O -0.372 6.372 11 C -0.572 4.572 12 H 0.099 0.901 13 C -0.125 4.125 14 N -0.520 5.520 15 Si 0.701 3.299 16 H -0.200 1.200 17 H -0.224 1.224 18 H -0.189 1.189 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.193 0.807 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.978 -4.199 9.739 10.789 hybrid contribution 0.591 -1.183 -0.771 1.531 sum 2.569 -5.382 8.968 10.770 Atomic orbital electron populations 1.21514 0.95496 1.01509 0.99867 1.21928 0.95603 0.98176 0.93399 0.90918 1.22333 0.96403 0.98242 0.97573 1.21165 0.94587 0.94839 0.96617 1.21900 1.01641 0.95474 1.00255 1.21904 0.97574 1.00888 0.98856 1.23485 1.01341 1.00652 0.92862 1.20075 0.85124 0.82780 0.93257 1.86489 1.54274 1.38205 1.58190 1.21387 1.50891 0.95735 0.89172 0.90125 1.24962 0.93774 0.97637 0.96173 1.69973 1.46203 1.35919 0.99866 0.87215 0.78672 0.87139 0.76854 1.19961 1.22381 1.18885 0.94970 0.92339 0.92604 0.92330 0.93115 0.93743 0.93798 0.91826 0.92796 0.93641 0.93377 0.91212 0.92684 0.80745 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.83 37.16 0.33 -2.20 16 2 C -0.07 -1.51 2.81 -88.76 -0.25 -1.76 16 3 H 0.07 1.52 8.02 -51.93 -0.42 1.11 16 4 C -0.11 -1.92 5.67 -25.61 -0.15 -2.06 16 5 C -0.07 -1.27 0.93 -153.39 -0.14 -1.42 16 6 C -0.14 -2.23 8.14 37.16 0.30 -1.93 16 7 C -0.13 -2.02 8.16 37.15 0.30 -1.72 16 8 C -0.15 -3.07 4.73 -25.07 -0.12 -3.19 16 9 C 0.23 5.39 0.47 -89.58 -0.04 5.35 16 10 O -0.56 -13.57 10.36 -35.23 -0.37 -13.94 16 11 C -0.53 -14.86 8.81 -34.44 -0.30 -15.17 16 12 H 0.08 2.41 8.02 -52.49 -0.42 1.99 16 13 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 14 N -0.88 -26.61 13.96 55.43 0.77 -25.84 16 15 Si 0.87 21.08 24.24 -169.99 -4.12 16.96 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.26 -5.92 4.80 56.52 0.27 -5.65 16 19 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 21 H 0.05 1.13 7.35 -51.93 -0.38 0.75 16 22 H 0.06 1.02 7.37 -51.93 -0.38 0.64 16 23 H 0.05 0.80 7.67 -51.93 -0.40 0.41 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.14 7.28 -51.93 -0.38 0.76 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.48 7.75 -51.93 -0.40 1.08 16 31 H 0.05 1.19 5.83 -51.93 -0.30 0.89 16 32 H 0.34 8.11 2.68 45.56 0.12 8.23 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 248.83 15.07 3.75 3.75 Total: -1.00 -29.07 248.83 -5.31 -34.38 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.19 Total: 6.66 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -0.16 Total: -21.97 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.84 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.37 Total: -13.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.12 Total: 16.96 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.07 -5.31 -34.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235609509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.602 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds