Wall clock time and date at job start Mon Mar 30 2020 02:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.43388 * 2 1 4 4 C 1.54277 * 110.48257 * 122.53821 * 2 1 3 5 5 C 1.53875 * 106.59531 * 142.42363 * 4 2 1 6 6 C 1.53003 * 110.02944 * 240.71487 * 5 4 2 7 7 C 1.52992 * 110.07473 * 119.30692 * 5 4 2 8 8 C 1.54269 * 106.59939 * 359.97438 * 5 4 2 9 9 C 1.54886 * 104.31300 * 336.32597 * 8 5 4 10 10 O 1.42900 * 110.75982 * 279.69307 * 9 8 5 11 11 C 1.50700 * 110.75580 * 156.31992 * 9 8 5 12 12 H 1.08001 * 120.00639 * 274.18718 * 11 9 8 13 13 C 1.37883 * 119.99818 * 94.18615 * 11 9 8 14 14 N 1.31513 * 120.00014 * 163.31986 * 13 11 9 15 15 Si 1.86798 * 120.00025 * 343.32580 * 13 11 9 16 16 H 1.48500 * 109.47217 * 95.56372 * 15 13 11 17 17 H 1.48500 * 109.47095 * 215.56271 * 15 13 11 18 18 H 1.48497 * 109.47171 * 335.56300 * 15 13 11 19 19 H 1.09007 * 109.47324 * 298.91311 * 1 2 3 20 20 H 1.08999 * 109.47081 * 58.91499 * 1 2 3 21 21 H 1.09003 * 109.47353 * 178.92063 * 1 2 3 22 22 H 1.08996 * 110.03280 * 23.13344 * 4 2 1 23 23 H 1.09006 * 110.06900 * 261.72594 * 4 2 1 24 24 H 1.08994 * 109.47034 * 177.16494 * 6 5 4 25 25 H 1.09005 * 109.46868 * 297.16597 * 6 5 4 26 26 H 1.09001 * 109.47231 * 57.16524 * 6 5 4 27 27 H 1.08999 * 109.47013 * 302.80381 * 7 5 4 28 28 H 1.08999 * 109.47358 * 62.80648 * 7 5 4 29 29 H 1.09000 * 109.46932 * 182.80852 * 7 5 4 30 30 H 1.09001 * 110.48340 * 95.06954 * 8 5 4 31 31 H 1.09000 * 110.48829 * 217.57982 * 8 5 4 32 32 H 0.96698 * 114.00004 * 298.85692 * 10 9 8 33 33 H 0.96996 * 120.00561 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0699 -0.7773 1.2184 5 6 3.3185 -1.5369 0.7370 6 6 3.1142 -3.0434 0.9091 7 6 4.5472 -1.0814 1.5267 8 6 3.4934 -1.1952 -0.7572 9 6 2.0753 -0.7835 -1.2244 10 8 1.2735 -1.9371 -1.4863 11 6 2.1502 0.1039 -2.4401 12 1 2.2818 1.1695 -2.3237 13 6 2.0506 -0.4446 -3.7012 14 7 1.7867 0.3253 -4.7342 15 14 2.2903 -2.2814 -3.9424 16 1 0.9680 -2.9573 -3.9432 17 1 2.9717 -2.5256 -5.2390 18 1 3.1216 -2.8215 -2.8368 19 1 -0.3634 0.4969 0.8996 20 1 -0.3633 0.5306 -0.8801 21 1 -0.3634 -1.0275 -0.0194 22 1 1.3184 -1.4819 1.5746 23 1 2.3388 -0.0839 2.0153 24 1 3.9824 -3.5747 0.5194 25 1 2.9914 -3.2749 1.9673 26 1 2.2231 -3.3540 0.3635 27 1 4.6700 -0.0039 1.4179 28 1 4.4138 -1.3274 2.5801 29 1 5.4331 -1.5885 1.1445 30 1 4.1910 -0.3667 -0.8798 31 1 3.8388 -2.0686 -1.3104 32 1 1.6214 -2.5074 -2.1854 33 1 1.7163 -0.0605 -5.6213 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235609509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:16 Heat of formation + Delta-G solvation = -77.276816 kcal Electronic energy + Delta-G solvation = -13912.400953 eV Core-core repulsion = 11743.981921 eV Total energy + Delta-G solvation = -2168.419032 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64151 -36.79922 -34.43007 -33.73238 -30.41156 -28.04787 -27.62003 -26.66388 -23.68718 -20.87257 -19.64343 -19.18029 -18.02135 -16.25516 -15.75098 -15.48712 -14.93215 -14.73684 -14.40892 -14.15028 -13.86720 -13.55565 -13.12579 -12.98190 -12.64197 -12.38181 -12.26888 -12.13958 -11.86377 -11.67094 -11.32728 -11.26035 -11.07964 -11.03658 -10.67148 -10.11651 -8.41433 -6.38380 1.15416 1.24072 1.35212 2.18646 2.87170 3.52214 3.83149 3.94999 4.05563 4.42822 4.48996 4.60948 4.72780 4.77214 4.84805 4.90476 4.95803 5.03694 5.03938 5.18425 5.23930 5.27505 5.34483 5.41562 5.46345 5.58282 5.63755 5.69826 5.77416 6.14330 6.59876 6.82213 7.25272 8.76322 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037810 B = 0.015808 C = 0.013870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.369439 B = 1770.863056 C = 2018.305842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 H 0.062 0.938 4 C -0.100 4.100 5 C -0.071 4.071 6 C -0.134 4.134 7 C -0.131 4.131 8 C -0.143 4.143 9 C 0.217 3.783 10 O -0.560 6.560 11 C -0.543 4.543 12 H 0.039 0.961 13 C 0.017 3.983 14 N -0.933 5.933 15 Si 0.931 3.069 16 H -0.265 1.265 17 H -0.294 1.294 18 H -0.235 1.235 19 H 0.065 0.935 20 H 0.027 0.973 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.339 0.661 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -6.414 11.880 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.080 0.920 4 C -0.137 4.137 5 C -0.071 4.071 6 C -0.191 4.191 7 C -0.188 4.188 8 C -0.181 4.181 9 C 0.177 3.823 10 O -0.373 6.373 11 C -0.580 4.580 12 H 0.057 0.943 13 C -0.182 4.182 14 N -0.572 5.572 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.222 1.222 18 H -0.160 1.160 19 H 0.084 0.916 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.193 0.807 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.622 -6.134 12.162 13.872 hybrid contribution 0.361 -0.450 -1.525 1.631 sum 2.983 -6.584 10.637 12.861 Atomic orbital electron populations 1.21460 0.95040 1.01246 1.00113 1.21960 0.96152 0.97801 0.93834 0.91953 1.22295 0.96545 0.98461 0.96423 1.21175 0.95840 0.96036 0.94043 1.21884 1.01187 0.94206 1.01872 1.21861 0.96314 1.00766 0.99892 1.23357 0.98867 1.00009 0.95873 1.20184 0.87178 0.82431 0.92503 1.86492 1.54719 1.38043 1.58091 1.21697 1.50218 0.94718 0.91405 0.94257 1.25842 0.93593 1.02921 0.95797 1.70115 1.48238 1.38364 1.00495 0.86180 0.79343 0.81006 0.77527 1.19107 1.22239 1.16039 0.91562 0.95416 0.92870 0.91395 0.90610 0.92953 0.91120 0.93567 0.93078 0.91096 0.92696 0.92151 0.93163 0.80727 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.83 71.98 0.64 -4.10 16 2 C -0.08 -3.20 2.81 -9.59 -0.03 -3.23 16 3 H 0.06 2.62 8.02 -2.39 -0.02 2.60 16 4 C -0.10 -3.20 5.67 31.32 0.18 -3.03 16 5 C -0.07 -2.26 0.93 -51.46 -0.05 -2.31 16 6 C -0.13 -3.86 8.14 71.98 0.59 -3.27 16 7 C -0.13 -3.38 8.16 71.98 0.59 -2.80 16 8 C -0.14 -5.82 4.73 31.67 0.15 -5.67 16 9 C 0.22 10.18 0.47 -10.12 0.00 10.17 16 10 O -0.56 -26.49 10.36 -148.98 -1.54 -28.04 16 11 C -0.54 -31.18 8.81 25.60 0.23 -30.96 16 12 H 0.04 2.50 8.02 -2.91 -0.02 2.47 16 13 C 0.02 1.00 5.42 84.66 0.46 1.46 16 14 N -0.93 -58.41 13.96 21.45 0.30 -58.11 16 15 Si 0.93 43.62 24.24 68.60 1.66 45.28 16 16 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.23 -9.89 4.80 99.48 0.48 -9.41 16 19 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 20 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.05 2.08 7.35 -2.39 -0.02 2.06 16 22 H 0.07 2.08 7.37 -2.39 -0.02 2.06 16 23 H 0.08 2.07 7.67 -2.38 -0.02 2.05 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.05 1.48 7.28 -2.39 -0.02 1.47 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 2.52 7.75 -2.39 -0.02 2.51 16 31 H 0.05 2.06 5.83 -2.39 -0.01 2.04 16 32 H 0.34 15.57 2.68 -74.06 -0.20 15.37 16 33 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -64.21 248.83 3.80 -60.41 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.64 Total: 24.19 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 2.74 Total: -43.72 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.30 Total: -58.11 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.54 Total: -28.04 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.66 Total: 45.28 kcal Total: -64.21 3.80 -60.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235609509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.869 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds