Wall clock time and date at job start Mon Mar 30 2020 02:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46873 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.46289 * 294.99885 * 12 11 10 14 14 C 1.53036 * 109.46079 * 175.01737 * 12 11 10 15 15 C 1.53120 * 109.28006 * 180.80192 * 14 12 11 16 16 C 1.53119 * 109.15547 * 57.65697 * 15 14 12 17 17 C 1.53038 * 109.28070 * 302.34627 * 16 15 14 18 18 N 1.46847 * 109.51185 * 59.18818 * 17 16 15 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 23 23 H 1.09009 * 109.47397 * 299.99590 * 11 10 9 24 24 H 1.08999 * 109.47532 * 59.99826 * 11 10 9 25 25 H 1.09004 * 109.50877 * 300.75168 * 14 12 11 26 26 H 1.09011 * 109.50192 * 60.82715 * 14 12 11 27 27 H 1.08996 * 109.52523 * 177.56171 * 15 14 12 28 28 H 1.08997 * 109.52508 * 297.75631 * 15 14 12 29 29 H 1.09005 * 109.50603 * 62.29257 * 16 15 14 30 30 H 1.09001 * 109.50279 * 182.40642 * 16 15 14 31 31 H 1.08999 * 109.45976 * 179.19621 * 17 16 15 32 32 H 1.08996 * 109.46389 * 299.17411 * 17 16 15 33 33 H 1.00902 * 110.98653 * 174.15200 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5303 -6.0431 -0.0005 13 1 3.0966 -6.0217 -0.9314 14 6 1.8044 -7.3846 0.1242 15 6 2.8348 -8.5170 0.1446 16 6 3.8068 -8.2910 1.3059 17 6 4.4746 -6.9232 1.1471 18 7 3.4471 -5.8742 1.1342 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.8405 -3.5487 -0.7819 23 1 0.8801 -4.9818 0.8887 24 1 0.8807 -4.9812 -0.8913 25 1 1.2268 -7.4014 1.0484 26 1 1.1348 -7.5164 -0.7258 27 1 2.3249 -9.4712 0.2768 28 1 3.3862 -8.5248 -0.7956 29 1 3.2608 -8.3221 2.2489 30 1 4.5685 -9.0707 1.3000 31 1 5.1567 -6.7531 1.9801 32 1 5.0317 -6.8975 0.2106 33 1 3.8672 -4.9568 1.1261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236191602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:48 Heat of formation + Delta-G solvation = -18.635103 kcal Electronic energy + Delta-G solvation = -12679.904124 eV Core-core repulsion = 10546.320738 eV Total energy + Delta-G solvation = -2133.583385 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.60784 -35.13455 -32.65736 -31.68400 -30.77274 -26.99332 -24.57079 -23.15359 -21.52834 -20.83831 -19.49409 -16.61773 -15.96441 -15.09207 -14.64539 -14.21945 -14.02378 -13.75732 -13.28405 -12.98112 -12.54436 -12.28318 -11.82139 -11.45314 -11.20455 -10.85298 -10.74795 -10.71063 -10.64083 -10.26496 -10.22889 -9.76570 -9.13902 -8.46060 -8.05573 -7.27690 -6.01439 -4.03373 3.33528 3.39060 3.42582 4.43943 4.47663 4.88138 4.95633 4.99999 5.26880 5.34521 5.45769 5.55523 5.63751 5.72058 5.82666 5.94248 5.97862 6.02621 6.14982 6.21906 6.25441 6.40603 6.61813 7.25987 7.43489 7.45098 7.79087 7.87701 8.15297 8.39842 8.62730 9.05672 9.61392 11.09753 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.073985 B = 0.006393 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.364976 B = 4378.701662 C = 4652.653496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.688 5.688 11 C 0.063 3.937 12 C 0.094 3.906 13 H 0.028 0.972 14 C -0.113 4.113 15 C -0.119 4.119 16 C -0.117 4.117 17 C 0.057 3.943 18 N -0.677 5.677 19 H 0.261 0.739 20 H 0.029 0.971 21 H -0.015 1.015 22 H 0.323 0.677 23 H 0.071 0.929 24 H 0.020 0.980 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 -14.267 -0.140 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.213 1.213 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.318 5.318 11 C -0.067 4.067 12 C -0.017 4.017 13 H 0.046 0.954 14 C -0.151 4.151 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.073 4.073 18 N -0.312 5.312 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.003 0.997 22 H 0.138 0.862 23 H 0.090 0.910 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.414 -14.438 0.988 15.451 hybrid contribution 0.573 1.196 -1.672 2.134 sum 5.987 -13.241 -0.683 14.548 Atomic orbital electron populations 1.69968 1.06097 1.26757 1.50955 1.24998 0.94874 0.99376 0.95374 0.86475 0.79623 0.83011 0.78127 1.20591 1.19911 1.21339 1.21188 0.93468 0.90287 1.50277 0.92013 1.19536 0.90555 0.87271 0.95772 1.60612 1.21414 1.01501 1.48227 1.21976 0.95012 0.89697 1.00023 1.21462 0.94083 0.94646 0.91473 0.95413 1.21609 0.97618 0.93685 1.02208 1.21555 0.97444 0.98286 0.98403 1.21589 0.98417 0.96274 0.99222 1.21889 0.93461 0.92406 0.99557 1.60179 1.19899 1.06808 1.44316 0.92929 0.95313 0.99716 0.86152 0.91007 0.96153 0.91087 0.92017 0.92222 0.92645 0.91266 0.92293 0.91226 0.96010 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.71 9.32 -34.44 -0.32 -15.03 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.20 5.21 5.44 -4.98 -0.03 5.18 16 10 N -0.69 -14.81 5.52 -115.05 -0.64 -15.45 16 11 C 0.06 1.16 5.38 -3.82 -0.02 1.14 16 12 C 0.09 1.43 2.72 -67.72 -0.18 1.24 16 13 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 14 C -0.11 -1.46 5.37 -26.65 -0.14 -1.61 16 15 C -0.12 -1.33 6.00 -26.61 -0.16 -1.48 16 16 C -0.12 -1.30 6.09 -26.65 -0.16 -1.47 16 17 C 0.06 0.71 6.55 -3.83 -0.03 0.69 16 18 N -0.68 -10.38 6.50 -106.76 -0.69 -11.07 16 19 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 20 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 21 H -0.01 -0.42 8.14 -51.93 -0.42 -0.85 16 22 H 0.32 6.65 8.72 -39.29 -0.34 6.31 16 23 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.36 5.99 7.90 -39.29 -0.31 5.68 16 LS Contribution 267.09 15.07 4.03 4.03 Total: -1.00 -29.61 267.09 -8.42 -38.04 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.69 Total: 3.91 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.14 Total: -9.84 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.59 Total: -52.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.61 -8.42 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.400 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds