Wall clock time and date at job start Mon Mar 30 2020 02:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46873 * 180.02562 * 11 10 9 13 13 H 1.08990 * 109.46289 * 294.99885 * 12 11 10 14 14 C 1.53036 * 109.46079 * 175.01737 * 12 11 10 15 15 C 1.53120 * 109.28006 * 180.80192 * 14 12 11 16 16 C 1.53119 * 109.15547 * 57.65697 * 15 14 12 17 17 C 1.53038 * 109.28070 * 302.34627 * 16 15 14 18 18 N 1.46847 * 109.51185 * 59.18818 * 17 16 15 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.00899 * 111.00084 * 303.95478 * 10 9 7 23 23 H 1.09009 * 109.47397 * 299.99590 * 11 10 9 24 24 H 1.08999 * 109.47532 * 59.99826 * 11 10 9 25 25 H 1.09004 * 109.50877 * 300.75168 * 14 12 11 26 26 H 1.09011 * 109.50192 * 60.82715 * 14 12 11 27 27 H 1.08996 * 109.52523 * 177.56171 * 15 14 12 28 28 H 1.08997 * 109.52508 * 297.75631 * 15 14 12 29 29 H 1.09005 * 109.50603 * 62.29257 * 16 15 14 30 30 H 1.09001 * 109.50279 * 182.40642 * 16 15 14 31 31 H 1.08999 * 109.45976 * 179.19621 * 17 16 15 32 32 H 1.08996 * 109.46389 * 299.17411 * 17 16 15 33 33 H 1.00902 * 110.98653 * 174.15200 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5303 -6.0431 -0.0005 13 1 3.0966 -6.0217 -0.9314 14 6 1.8044 -7.3846 0.1242 15 6 2.8348 -8.5170 0.1446 16 6 3.8068 -8.2910 1.3059 17 6 4.4746 -6.9232 1.1471 18 7 3.4471 -5.8742 1.1342 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 2.8405 -3.5487 -0.7819 23 1 0.8801 -4.9818 0.8887 24 1 0.8807 -4.9812 -0.8913 25 1 1.2268 -7.4014 1.0484 26 1 1.1348 -7.5164 -0.7258 27 1 2.3249 -9.4712 0.2768 28 1 3.3862 -8.5248 -0.7956 29 1 3.2608 -8.3221 2.2489 30 1 4.5685 -9.0707 1.3000 31 1 5.1567 -6.7531 1.9801 32 1 5.0317 -6.8975 0.2106 33 1 3.8672 -4.9568 1.1261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236191602.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:47 Heat of formation + Delta-G solvation = -40.097307 kcal Electronic energy + Delta-G solvation = -12680.834795 eV Core-core repulsion = 10546.320738 eV Total energy + Delta-G solvation = -2134.514056 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.76244 -36.86454 -34.64585 -32.78463 -32.18396 -28.86503 -26.13187 -24.35623 -23.33383 -22.22458 -20.54657 -18.61066 -17.39750 -16.60348 -16.44633 -15.60991 -15.33360 -15.09757 -14.59274 -14.37395 -13.94232 -13.79563 -13.38645 -13.01775 -12.91002 -12.58742 -12.51385 -12.05949 -11.95945 -11.63918 -11.48353 -11.22018 -11.01680 -10.66349 -9.26031 -9.10036 -8.22709 -6.34226 1.41639 1.44012 1.54918 2.40241 3.10739 3.29304 3.54133 3.92916 4.04329 4.14010 4.24196 4.42058 4.51590 4.60304 4.68642 4.82507 4.88342 4.99029 5.06032 5.08404 5.13267 5.24118 5.25774 5.34517 5.51335 5.60459 6.00246 6.29199 6.41971 6.60960 6.71556 6.87829 7.36838 8.89188 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.073985 B = 0.006393 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.364976 B = 4378.701662 C = 4652.653496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.262 1.262 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.681 5.681 11 C 0.065 3.935 12 C 0.102 3.898 13 H 0.032 0.968 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.115 4.115 17 C 0.054 3.946 18 N -0.691 5.691 19 H 0.265 0.735 20 H -0.003 1.003 21 H -0.041 1.041 22 H 0.331 0.669 23 H 0.056 0.944 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -14.903 -0.355 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.199 1.199 5 H -0.186 1.186 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.311 5.311 11 C -0.065 4.065 12 C -0.008 4.008 13 H 0.049 0.951 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.075 4.075 18 N -0.325 5.325 19 H 0.074 0.926 20 H 0.015 0.985 21 H -0.023 1.023 22 H 0.147 0.853 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.933 -15.113 0.771 16.646 hybrid contribution 0.081 1.339 -1.592 2.082 sum 7.014 -13.774 -0.822 15.479 Atomic orbital electron populations 1.70102 1.07916 1.28030 1.51559 1.25995 0.95794 1.03532 0.94541 0.85283 0.78475 0.77761 0.78446 1.19873 1.18614 1.20726 1.21548 0.93864 0.91320 1.50579 0.91537 1.19182 0.90623 0.88988 0.93013 1.60464 1.20500 1.01473 1.48624 1.22023 0.95865 0.89342 0.99250 1.21376 0.93380 0.94322 0.91771 0.95060 1.21608 0.98125 0.93088 1.02170 1.21551 0.96963 0.98095 0.98707 1.21601 0.98906 0.95951 0.98834 1.22012 0.93050 0.92283 1.00169 1.60218 1.20933 1.07053 1.44325 0.92614 0.98466 1.02313 0.85255 0.92549 0.96084 0.91993 0.91117 0.90378 0.92006 0.92019 0.89922 0.90405 0.95508 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.98 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -30.95 9.32 25.60 0.24 -30.72 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.21 11.56 5.44 85.55 0.47 12.03 16 10 N -0.68 -29.78 5.52 -517.90 -2.86 -32.65 16 11 C 0.07 2.42 5.38 86.31 0.46 2.89 16 12 C 0.10 3.01 2.72 44.94 0.12 3.14 16 13 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 14 C -0.11 -2.72 5.37 30.65 0.16 -2.56 16 15 C -0.12 -2.25 6.00 30.67 0.18 -2.06 16 16 C -0.12 -2.26 6.09 30.65 0.19 -2.07 16 17 C 0.05 1.25 6.55 86.33 0.57 1.81 16 18 N -0.69 -20.60 6.50 -491.69 -3.20 -23.79 16 19 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 20 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 21 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 22 H 0.33 13.65 8.72 -89.69 -0.78 12.87 16 23 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 24 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.62 8.14 -2.38 -0.02 1.61 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.35 11.48 7.90 -89.69 -0.71 10.78 16 Total: -1.00 -63.38 267.09 -1.31 -64.69 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.42 Total: 19.39 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 2.85 Total: -17.11 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -5.77 Total: -113.66 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -63.38 -1.31 -64.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191602.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.592 kcal (2) G-P(sol) polarization free energy of solvation -63.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds