Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47023 * 60.00009 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46042 * 65.01867 * 12 11 10 14 14 C 1.53030 * 109.46265 * 184.99889 * 12 11 10 15 15 C 1.53121 * 109.27856 * 179.19503 * 14 12 11 16 16 C 1.53111 * 109.16207 * 302.34661 * 15 14 12 17 17 C 1.53037 * 109.27713 * 57.65433 * 16 15 14 18 18 N 1.46846 * 109.52361 * 300.81759 * 17 16 15 19 19 H 0.97001 * 120.00215 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00906 * 110.99345 * 303.95214 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09002 * 109.50480 * 299.14087 * 14 12 11 26 26 H 1.08999 * 109.50583 * 59.25564 * 14 12 11 27 27 H 1.08997 * 109.51791 * 62.25395 * 15 14 12 28 28 H 1.09004 * 109.52335 * 182.37233 * 15 14 12 29 29 H 1.09004 * 109.50565 * 177.59312 * 16 15 14 30 30 H 1.09001 * 109.50555 * 297.71132 * 16 15 14 31 31 H 1.08997 * 109.46374 * 60.83820 * 17 16 15 32 32 H 1.09003 * 109.46576 * 180.81652 * 17 16 15 33 33 H 1.00902 * 111.00350 * 297.64998 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 6 2.5302 -6.0431 0.0019 13 1 3.0950 -6.0220 0.9339 14 6 1.8046 -7.3845 -0.1245 15 6 2.8352 -8.5168 -0.1436 16 6 3.8091 -8.2905 -1.3031 17 6 4.4766 -6.9227 -1.1426 18 7 3.4492 -5.8736 -1.1309 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8410 -3.5489 -0.7792 23 1 0.8813 -4.9815 -0.8895 24 1 0.8795 -4.9813 0.8905 25 1 1.1340 -7.5169 0.7246 26 1 1.2286 -7.4010 -1.0497 27 1 3.3848 -8.5249 0.7976 28 1 2.3253 -9.4712 -0.2758 29 1 4.5708 -9.0702 -1.2961 30 1 3.2647 -8.3212 -2.2469 31 1 5.0322 -6.8975 -0.2051 32 1 5.1600 -6.7522 -1.9744 33 1 2.9455 -5.8509 -2.0049 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236191857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -18.933649 kcal Electronic energy + Delta-G solvation = -12686.894204 eV Core-core repulsion = 10553.297873 eV Total energy + Delta-G solvation = -2133.596331 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.91217 -35.04446 -32.61032 -31.56815 -30.80647 -26.97559 -24.55648 -23.16681 -21.44238 -20.72568 -20.27116 -16.43976 -15.42139 -15.26926 -14.83092 -14.47300 -14.17927 -13.77117 -13.30988 -12.86815 -12.36647 -12.04725 -11.93478 -11.39574 -11.26903 -11.04139 -10.94952 -10.73131 -10.57801 -10.49252 -10.26779 -9.74844 -9.07551 -8.40727 -8.11545 -7.08546 -5.95821 -3.96758 3.36252 3.43054 3.49355 4.39143 4.50079 4.72002 4.82482 4.97051 5.08773 5.40178 5.41629 5.43178 5.57137 5.71503 5.78522 5.86238 5.95969 5.97520 6.04968 6.12549 6.18651 6.36975 6.53041 7.25322 7.37411 7.54252 7.59251 7.89625 8.23891 8.60173 8.81156 9.14764 9.68056 11.15597 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.074207 B = 0.006384 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.233020 B = 4384.573890 C = 4655.724750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.683 5.683 11 C 0.067 3.933 12 C 0.091 3.909 13 H 0.085 0.915 14 C -0.153 4.153 15 C -0.118 4.118 16 C -0.158 4.158 17 C 0.059 3.941 18 N -0.674 5.674 19 H 0.259 0.741 20 H -0.017 1.017 21 H 0.024 0.976 22 H 0.340 0.660 23 H 0.012 0.988 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -15.401 -2.243 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.315 5.315 11 C -0.063 4.063 12 C -0.019 4.019 13 H 0.103 0.897 14 C -0.193 4.193 15 C -0.155 4.155 16 C -0.198 4.198 17 C -0.071 4.071 18 N -0.302 5.302 19 H 0.069 0.931 20 H 0.001 0.999 21 H 0.042 0.958 22 H 0.159 0.841 23 H 0.030 0.970 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.610 -14.780 -1.223 15.856 hybrid contribution -0.625 0.026 -1.202 1.355 sum 4.985 -14.754 -2.425 15.761 Atomic orbital electron populations 1.69977 1.06099 1.26525 1.51465 1.24998 0.94861 0.99355 0.95521 0.86434 0.80138 0.83393 0.77402 1.19617 1.21168 1.21078 1.21264 0.93615 0.90265 1.49569 0.91870 1.19558 0.90758 0.87793 0.95417 1.60542 1.20524 1.00407 1.50037 1.21882 0.94306 0.90772 0.99376 1.21673 0.93086 0.92182 0.94956 0.89693 1.22283 0.98395 0.96361 1.02255 1.21535 0.97187 0.98127 0.98689 1.22287 0.99259 0.99614 0.98627 1.21986 0.94660 0.88018 1.02390 1.60543 1.16783 1.46911 1.05996 0.93092 0.99947 0.95764 0.84141 0.96951 0.91687 0.91422 0.92230 0.91937 0.92440 0.91897 0.92282 0.91006 0.91030 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.28 55.43 0.74 -26.90 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -14.97 9.32 -34.44 -0.32 -15.29 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.19 5.25 5.44 -4.97 -0.03 5.22 16 10 N -0.68 -15.47 6.48 -115.06 -0.75 -16.22 16 11 C 0.07 1.24 5.38 -3.82 -0.02 1.22 16 12 C 0.09 1.34 2.73 -67.72 -0.18 1.16 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.15 -1.84 5.36 -26.65 -0.14 -1.98 16 15 C -0.12 -1.21 6.00 -26.61 -0.16 -1.37 16 16 C -0.16 -1.56 6.08 -26.65 -0.16 -1.72 16 17 C 0.06 0.67 6.55 -3.83 -0.03 0.65 16 18 N -0.67 -9.39 5.57 -106.76 -0.59 -9.99 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H -0.02 -0.50 8.14 -51.93 -0.42 -0.92 16 21 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.34 7.58 7.86 -39.29 -0.31 7.27 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 4.50 8.79 -39.29 -0.35 4.15 16 LS Contribution 267.13 15.07 4.03 4.03 Total: -1.00 -30.52 267.13 -8.43 -38.95 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.70 Total: 3.55 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.14 Total: -10.65 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.60 Total: -53.11 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.52 -8.43 -38.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.017 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds