Wall clock time and date at job start Mon Mar 30 2020 02:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00178 * 2 1 4 4 H 1.48500 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47023 * 60.00009 * 3 2 1 7 7 C 1.37876 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.46042 * 65.01867 * 12 11 10 14 14 C 1.53030 * 109.46265 * 184.99889 * 12 11 10 15 15 C 1.53121 * 109.27856 * 179.19503 * 14 12 11 16 16 C 1.53111 * 109.16207 * 302.34661 * 15 14 12 17 17 C 1.53037 * 109.27713 * 57.65433 * 16 15 14 18 18 N 1.46846 * 109.52361 * 300.81759 * 17 16 15 19 19 H 0.97001 * 120.00215 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46849 * 60.00281 * 9 7 2 21 21 H 1.08995 * 109.46627 * 299.99617 * 9 7 2 22 22 H 1.00906 * 110.99345 * 303.95214 * 10 9 7 23 23 H 1.09001 * 109.47062 * 59.99745 * 11 10 9 24 24 H 1.08993 * 109.47084 * 299.99192 * 11 10 9 25 25 H 1.09002 * 109.50480 * 299.14087 * 14 12 11 26 26 H 1.08999 * 109.50583 * 59.25564 * 14 12 11 27 27 H 1.08997 * 109.51791 * 62.25395 * 15 14 12 28 28 H 1.09004 * 109.52335 * 182.37233 * 15 14 12 29 29 H 1.09004 * 109.50565 * 177.59312 * 16 15 14 30 30 H 1.09001 * 109.50555 * 297.71132 * 16 15 14 31 31 H 1.08997 * 109.46374 * 60.83820 * 17 16 15 32 32 H 1.09003 * 109.46576 * 180.81652 * 17 16 15 33 33 H 1.00902 * 111.00350 * 297.64998 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5052 -4.9070 0.0012 12 6 2.5302 -6.0431 0.0019 13 1 3.0950 -6.0220 0.9339 14 6 1.8046 -7.3845 -0.1245 15 6 2.8352 -8.5168 -0.1436 16 6 3.8091 -8.2905 -1.3031 17 6 4.4766 -6.9227 -1.1426 18 7 3.4492 -5.8736 -1.1309 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8410 -3.5489 -0.7792 23 1 0.8813 -4.9815 -0.8895 24 1 0.8795 -4.9813 0.8905 25 1 1.1340 -7.5169 0.7246 26 1 1.2286 -7.4010 -1.0497 27 1 3.3848 -8.5249 0.7976 28 1 2.3253 -9.4712 -0.2758 29 1 4.5708 -9.0702 -1.2961 30 1 3.2647 -8.3212 -2.2469 31 1 5.0322 -6.8975 -0.2051 32 1 5.1600 -6.7522 -1.9744 33 1 2.9455 -5.8509 -2.0049 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236191857.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:49 Heat of formation + Delta-G solvation = -41.298985 kcal Electronic energy + Delta-G solvation = -12687.864038 eV Core-core repulsion = 10553.297873 eV Total energy + Delta-G solvation = -2134.566165 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.98744 -36.81358 -34.62220 -32.57295 -32.20988 -28.85162 -26.13206 -24.30671 -23.24652 -22.11599 -21.25209 -18.58657 -16.94815 -16.49441 -16.43708 -15.75788 -15.38841 -15.03797 -14.83869 -14.49879 -13.88369 -13.40636 -13.39761 -12.96115 -12.68443 -12.65612 -12.45500 -12.18366 -12.00006 -11.86678 -11.54819 -11.37772 -11.12489 -10.65673 -9.18541 -8.97608 -8.21348 -6.32475 1.41991 1.43038 1.57621 2.41852 3.11643 3.31781 3.56398 3.93077 3.98506 4.10986 4.32497 4.35638 4.43031 4.53892 4.75152 4.78096 4.90234 4.97082 5.07381 5.09808 5.14024 5.19738 5.23325 5.29932 5.42699 5.64101 6.04858 6.20020 6.51548 6.56294 6.80143 6.98995 7.38963 8.90739 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.074207 B = 0.006384 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.233020 B = 4384.573890 C = 4655.724750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.682 5.682 11 C 0.067 3.933 12 C 0.103 3.897 13 H 0.074 0.926 14 C -0.147 4.147 15 C -0.115 4.115 16 C -0.152 4.152 17 C 0.059 3.941 18 N -0.691 5.691 19 H 0.265 0.735 20 H -0.043 1.043 21 H -0.004 1.004 22 H 0.343 0.657 23 H 0.012 0.988 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -15.977 -2.585 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.314 5.314 11 C -0.064 4.064 12 C -0.007 4.007 13 H 0.092 0.908 14 C -0.187 4.187 15 C -0.153 4.153 16 C -0.191 4.191 17 C -0.070 4.070 18 N -0.320 5.320 19 H 0.074 0.926 20 H -0.025 1.025 21 H 0.014 0.986 22 H 0.162 0.838 23 H 0.030 0.970 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.860 -15.389 -1.567 16.921 hybrid contribution -1.033 0.160 -1.097 1.515 sum 5.827 -15.229 -2.664 16.522 Atomic orbital electron populations 1.70100 1.07862 1.27939 1.51767 1.25987 0.95818 1.03485 0.94550 0.85238 0.78878 0.78074 0.77808 1.18706 1.20142 1.20287 1.21583 0.93759 0.91497 1.50337 0.91926 1.19225 0.90768 0.89392 0.92806 1.60435 1.19827 1.00943 1.50185 1.21983 0.95314 0.90071 0.99002 1.21430 0.92307 0.91974 0.94992 0.90770 1.22204 0.98732 0.95318 1.02441 1.21533 0.96825 0.97871 0.99028 1.22221 0.99465 0.98956 0.98463 1.22039 0.94062 0.88276 1.02632 1.60498 1.17088 1.48716 1.05729 0.92614 1.02543 0.98561 0.83788 0.96965 0.92323 0.91187 0.92100 0.91846 0.90859 0.90071 0.92010 0.91479 0.89951 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.28 21.45 0.28 -57.85 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 3 Si 0.98 45.51 29.54 68.60 2.03 47.54 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -31.84 9.32 25.60 0.24 -31.60 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.67 5.44 85.56 0.47 12.13 16 10 N -0.68 -31.48 6.48 -517.94 -3.36 -34.83 16 11 C 0.07 2.47 5.38 86.31 0.46 2.94 16 12 C 0.10 2.97 2.73 44.94 0.12 3.09 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C -0.15 -3.30 5.36 30.64 0.16 -3.14 16 15 C -0.11 -2.08 6.00 30.67 0.18 -1.89 16 16 C -0.15 -2.57 6.08 30.64 0.19 -2.38 16 17 C 0.06 1.23 6.55 86.33 0.57 1.80 16 18 N -0.69 -18.58 5.57 -491.68 -2.74 -21.32 16 19 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 21 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 22 H 0.34 15.45 7.86 -89.69 -0.71 14.74 16 23 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.34 8.74 8.79 -89.69 -0.79 7.95 16 Total: -1.00 -65.24 267.13 -1.35 -66.59 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.42 Total: 18.51 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 2.85 Total: -18.63 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -5.81 Total: -114.00 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.24 -1.35 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236191857.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.295 kcal (2) G-P(sol) polarization free energy of solvation -65.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds