Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 9 9 C 1.53000 * 109.47328 * 179.97438 * 7 6 5 10 10 C 1.50705 * 109.47020 * 295.00574 * 9 7 6 11 11 H 1.08003 * 120.00165 * 359.97438 * 10 9 7 12 12 C 1.37877 * 119.99815 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00431 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47156 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46840 * 120.00187 * 14 12 10 17 17 H 1.48497 * 109.47155 * 239.99915 * 14 12 10 18 18 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 19 19 H 1.08996 * 109.47747 * 179.97438 * 18 2 1 20 20 O 1.42895 * 109.47326 * 300.00098 * 18 2 1 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 27 27 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 28 28 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 29 29 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.46990 * 54.99709 * 9 7 6 31 31 H 1.08991 * 109.47625 * 175.00207 * 9 7 6 32 32 H 0.96993 * 120.00093 * 179.97438 * 13 12 10 33 33 H 0.96696 * 114.00034 * 299.99895 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4401 -2.1638 1.2491 9 6 2.0396 -2.8854 2.4983 10 6 1.4382 -4.2658 2.5614 11 1 0.7601 -4.5953 1.7880 12 6 1.7537 -5.1081 3.6064 13 7 2.5798 -4.7072 4.5479 14 14 1.0077 -6.8190 3.6849 15 1 0.1178 -7.0252 2.5141 16 1 2.0923 -7.8332 3.6664 17 1 0.2206 -6.9588 4.9363 18 6 2.0400 -0.7212 1.2491 19 1 3.1300 -0.7217 1.2489 20 8 1.5638 -0.0477 2.4159 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -0.2073 -2.1392 25 1 3.1300 -0.7208 -1.2496 26 1 1.8937 -2.6776 -2.1391 27 1 0.4400 -2.1637 -1.2493 28 1 3.1301 -2.8849 -0.0002 29 1 1.6771 -3.9128 -0.0004 30 1 3.1258 -2.9641 2.4548 31 1 1.7513 -2.3226 3.3861 32 1 2.8014 -5.2996 5.2832 33 1 1.8491 0.8738 2.4821 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238407750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = -86.569410 kcal Electronic energy + Delta-G solvation = -13381.194575 eV Core-core repulsion = 11212.372586 eV Total energy + Delta-G solvation = -2168.821989 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.17758 -35.08071 -33.54990 -31.55480 -29.94458 -26.48570 -26.21874 -23.02634 -21.69142 -20.02097 -18.25666 -16.57947 -16.13936 -15.06086 -14.64211 -14.26744 -13.81140 -13.31181 -12.56635 -12.34115 -12.07225 -11.92624 -11.64878 -11.33104 -11.15909 -10.81928 -10.66365 -10.55395 -10.30426 -10.14348 -9.78116 -9.50642 -9.36426 -8.85244 -8.70350 -8.23593 -5.89490 -3.90399 3.35989 3.43310 3.47116 4.53258 4.77426 5.05340 5.08090 5.35012 5.45846 5.61866 5.66401 5.75796 5.87370 5.93064 6.09733 6.15647 6.17401 6.28866 6.31707 6.43123 6.62145 6.67038 6.74822 7.03669 7.14557 7.28699 7.82489 8.01729 8.15234 8.25725 8.55059 9.17193 9.72041 11.21954 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047180 B = 0.009948 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.332038 B = 2813.885900 C = 3103.309378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.125 4.125 6 C -0.104 4.104 7 C -0.072 4.072 8 H 0.065 0.935 9 C 0.029 3.971 10 C -0.512 4.512 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.113 3.887 19 H 0.045 0.955 20 O -0.554 6.554 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.010 0.990 31 H 0.026 0.974 32 H 0.258 0.742 33 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 8.438 -9.926 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.142 4.142 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.163 4.163 6 C -0.141 4.141 7 C -0.091 4.091 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.550 4.550 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.535 5.535 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.211 1.211 18 C 0.054 3.946 19 H 0.063 0.937 20 O -0.357 6.357 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.454 7.780 -9.661 12.489 hybrid contribution -0.023 -0.387 0.005 0.388 sum -1.477 7.393 -9.656 12.250 Atomic orbital electron populations 1.21825 0.94926 1.02611 1.00697 1.21825 0.97071 0.98689 0.96578 0.92241 1.21495 1.00246 0.96302 0.96653 1.21683 1.00868 0.95075 0.98640 1.21500 1.00130 0.99921 0.92561 1.21196 1.00236 0.90240 0.97400 0.91675 1.19085 0.95764 0.94233 0.91685 1.21317 1.26822 0.99103 1.07785 0.92715 1.25018 0.95396 0.98291 0.95864 1.69987 1.35258 1.36190 1.12108 0.86614 0.79042 0.84922 0.77882 1.19811 1.21177 1.21133 1.21970 0.96218 0.93725 0.82674 0.93694 1.86679 1.77347 1.27473 1.44215 0.92419 0.91616 0.93840 0.92675 0.92324 0.92792 0.92010 0.92796 0.90645 0.97134 0.95527 0.93259 0.79484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.35 37.16 0.31 -1.73 16 2 C -0.12 -1.76 2.91 -90.62 -0.26 -2.03 16 3 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -1.47 5.45 -26.73 -0.15 -1.62 16 5 C -0.13 -1.87 5.65 -26.73 -0.15 -2.02 16 6 C -0.10 -1.95 5.01 -26.73 -0.13 -2.08 16 7 C -0.07 -1.53 1.60 -90.62 -0.15 -1.68 16 8 H 0.06 1.44 6.43 -51.93 -0.33 1.11 16 9 C 0.03 0.79 4.37 -27.88 -0.12 0.67 16 10 C -0.51 -14.75 8.41 -34.44 -0.29 -15.04 16 11 H 0.05 1.53 7.06 -52.48 -0.37 1.16 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 14 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 C 0.11 2.02 2.58 -26.73 -0.07 1.96 16 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 20 O -0.55 -10.20 11.89 -35.23 -0.42 -10.62 16 21 H 0.06 0.84 7.68 -51.93 -0.40 0.44 16 22 H 0.06 1.03 4.81 -51.93 -0.25 0.78 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.53 6.95 -51.93 -0.36 1.17 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.03 0.79 7.54 -51.93 -0.39 0.40 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.36 4.74 9.08 45.56 0.41 5.15 16 LS Contribution 255.25 15.07 3.85 3.85 Total: -1.00 -31.63 255.25 -6.51 -38.14 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.54 Total: 0.55 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.11 Total: -22.06 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.74 Total: -26.99 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.42 Total: -10.62 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.63 -6.51 -38.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238407750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.433 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds