Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 8 8 H 1.09000 * 109.46870 * 60.00217 * 7 6 5 9 9 C 1.53000 * 109.47328 * 179.97438 * 7 6 5 10 10 C 1.50705 * 109.47020 * 295.00574 * 9 7 6 11 11 H 1.08003 * 120.00165 * 359.97438 * 10 9 7 12 12 C 1.37877 * 119.99815 * 179.97438 * 10 9 7 13 13 N 1.31515 * 120.00431 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99799 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47156 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46840 * 120.00187 * 14 12 10 17 17 H 1.48497 * 109.47155 * 239.99915 * 14 12 10 18 18 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 19 19 H 1.08996 * 109.47747 * 179.97438 * 18 2 1 20 20 O 1.42895 * 109.47326 * 300.00098 * 18 2 1 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 27 27 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 28 28 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 29 29 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.46990 * 54.99709 * 9 7 6 31 31 H 1.08991 * 109.47625 * 175.00207 * 9 7 6 32 32 H 0.96993 * 120.00093 * 179.97438 * 13 12 10 33 33 H 0.96696 * 114.00034 * 299.99895 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4401 -2.1638 1.2491 9 6 2.0396 -2.8854 2.4983 10 6 1.4382 -4.2658 2.5614 11 1 0.7601 -4.5953 1.7880 12 6 1.7537 -5.1081 3.6064 13 7 2.5798 -4.7072 4.5479 14 14 1.0077 -6.8190 3.6849 15 1 0.1178 -7.0252 2.5141 16 1 2.0923 -7.8332 3.6664 17 1 0.2206 -6.9588 4.9363 18 6 2.0400 -0.7212 1.2491 19 1 3.1300 -0.7217 1.2489 20 8 1.5638 -0.0477 2.4159 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -0.2073 -2.1392 25 1 3.1300 -0.7208 -1.2496 26 1 1.8937 -2.6776 -2.1391 27 1 0.4400 -2.1637 -1.2493 28 1 3.1301 -2.8849 -0.0002 29 1 1.6771 -3.9128 -0.0004 30 1 3.1258 -2.9641 2.4548 31 1 1.7513 -2.3226 3.3861 32 1 2.8014 -5.2996 5.2832 33 1 1.8491 0.8738 2.4821 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238407750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = -108.257037 kcal Electronic energy + Delta-G solvation = -13382.135021 eV Core-core repulsion = 11212.372586 eV Total energy + Delta-G solvation = -2169.762435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.56562 -36.49401 -35.52641 -33.38162 -31.36349 -28.43879 -27.42355 -24.97124 -23.03900 -21.67781 -19.63351 -18.46333 -17.89580 -16.71559 -16.05867 -15.87686 -15.31738 -14.69966 -14.21973 -13.89101 -13.79170 -13.61695 -13.04682 -12.81775 -12.76149 -12.49528 -12.46908 -12.09783 -11.81298 -11.64591 -11.42804 -11.14621 -11.02625 -10.65089 -10.52585 -10.30075 -8.16996 -6.27019 1.37666 1.38586 1.51706 2.41134 3.15385 3.47156 3.84824 3.86175 4.14004 4.32318 4.38309 4.48397 4.56261 4.66375 4.76520 4.86804 5.02930 5.06690 5.11208 5.17746 5.20230 5.37646 5.40442 5.51267 5.51531 5.57596 5.66645 5.87722 5.90929 6.29793 6.88871 7.07916 7.40878 8.95379 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047180 B = 0.009948 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.332038 B = 2813.885900 C = 3103.309378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 H 0.088 0.912 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.100 4.100 7 C -0.067 4.067 8 H 0.053 0.947 9 C 0.037 3.963 10 C -0.529 4.529 11 H 0.060 0.940 12 C -0.006 4.006 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.260 1.260 16 H -0.277 1.277 17 H -0.280 1.280 18 C 0.113 3.887 19 H 0.039 0.961 20 O -0.580 6.580 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.052 0.948 30 H -0.019 1.019 31 H -0.015 1.015 32 H 0.261 0.739 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 8.841 -12.004 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 H 0.106 0.894 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.086 4.086 8 H 0.071 0.929 9 C 0.000 4.000 10 C -0.567 4.567 11 H 0.078 0.922 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.184 1.184 16 H -0.203 1.203 17 H -0.206 1.206 18 C 0.054 3.946 19 H 0.057 0.943 20 O -0.387 6.387 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.000 1.000 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.115 8.205 -11.753 14.489 hybrid contribution 0.205 -0.479 0.719 0.888 sum -1.910 7.727 -11.034 13.605 Atomic orbital electron populations 1.21805 0.94779 1.01645 1.01675 1.21764 0.97079 0.99730 0.94680 0.89371 1.21522 1.00666 0.95024 0.97227 1.21626 1.01004 0.96064 0.96858 1.21415 0.99708 0.99017 0.93657 1.21048 0.99297 0.92484 0.95733 0.92904 1.18928 0.93858 0.94082 0.93122 1.21702 1.26902 1.00082 1.08027 0.92191 1.26012 0.95785 1.03078 0.95362 1.70134 1.36681 1.38041 1.12867 0.85430 0.78398 0.79105 0.78318 1.18421 1.20285 1.20581 1.21888 0.95823 0.92226 0.84620 0.94260 1.86620 1.77695 1.29470 1.44933 0.93292 0.93549 0.91009 0.89522 0.91774 0.90645 0.91759 0.93338 0.92907 1.00024 0.99625 0.92997 0.76854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.35 71.98 0.60 -3.08 16 2 C -0.11 -2.94 2.91 -10.79 -0.03 -2.97 16 3 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 4 C -0.11 -2.47 5.45 30.60 0.17 -2.30 16 5 C -0.12 -3.24 5.65 30.60 0.17 -3.06 16 6 C -0.10 -3.77 5.01 30.59 0.15 -3.62 16 7 C -0.07 -2.91 1.60 -10.79 -0.02 -2.93 16 8 H 0.05 2.40 6.43 -2.39 -0.02 2.39 16 9 C 0.04 2.10 4.37 29.85 0.13 2.23 16 10 C -0.53 -31.44 8.41 25.60 0.22 -31.23 16 11 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 12 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 13 N -0.94 -59.75 13.29 21.45 0.28 -59.46 16 14 Si 0.96 46.01 29.54 68.60 2.03 48.03 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 18 C 0.11 4.02 2.58 30.59 0.08 4.09 16 19 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 20 O -0.58 -21.52 11.89 -148.98 -1.77 -23.29 16 21 H 0.05 1.34 7.68 -2.39 -0.02 1.32 16 22 H 0.05 1.37 4.81 -2.39 -0.01 1.36 16 23 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.75 6.43 -2.39 -0.02 1.73 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.18 6.95 -2.39 -0.02 2.16 16 30 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 31 H -0.01 -0.94 7.54 -2.39 -0.02 -0.95 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.38 9.77 9.08 -74.06 -0.67 9.10 16 Total: -1.00 -70.55 255.25 2.88 -67.67 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.41 Total: 9.79 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 1.93 Total: -42.73 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.28 Total: -59.46 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.77 Total: -23.29 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.55 2.88 -67.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238407750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.591 kcal (2) G-P(sol) polarization free energy of solvation -70.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds