Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47683 * 2 1 4 4 C 1.52998 * 109.47257 * 239.99134 * 2 1 3 5 5 C 1.52996 * 109.47584 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46986 * 60.00310 * 5 4 2 7 7 C 1.53003 * 109.46891 * 300.00500 * 6 5 4 8 8 H 1.09003 * 109.46755 * 299.99309 * 7 6 5 9 9 C 1.53007 * 109.46891 * 180.02562 * 7 6 5 10 10 C 1.50697 * 109.46894 * 64.99712 * 9 7 6 11 11 H 1.08002 * 120.00599 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99675 * 179.97438 * 10 9 7 13 13 N 1.31517 * 120.00210 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00019 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46845 * 269.99914 * 14 12 10 16 16 H 1.48503 * 109.47399 * 29.99403 * 14 12 10 17 17 H 1.48498 * 109.47295 * 150.00010 * 14 12 10 18 18 C 1.52991 * 109.47569 * 59.99638 * 7 6 5 19 19 H 1.09001 * 109.47433 * 179.97438 * 18 7 6 20 20 O 1.42907 * 109.47330 * 60.00095 * 18 7 6 21 21 H 1.09009 * 109.47130 * 300.00793 * 1 2 3 22 22 H 1.09006 * 109.47018 * 60.00417 * 1 2 3 23 23 H 1.08995 * 109.48032 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47070 * 300.00941 * 4 2 1 25 25 H 1.09006 * 109.46740 * 60.00279 * 4 2 1 26 26 H 1.08996 * 109.47396 * 179.97438 * 5 4 2 27 27 H 1.08997 * 109.47364 * 300.00871 * 5 4 2 28 28 H 1.08994 * 109.47390 * 180.02562 * 6 5 4 29 29 H 1.09003 * 109.46856 * 59.99747 * 6 5 4 30 30 H 1.08995 * 109.46729 * 304.99704 * 9 7 6 31 31 H 1.09007 * 109.46460 * 184.99560 * 9 7 6 32 32 H 0.96998 * 119.99640 * 180.02562 * 13 12 10 33 33 H 0.96690 * 113.99848 * 180.02562 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5699 -0.7220 -1.2489 6 6 4.0794 -1.4436 0.0005 7 6 3.5694 -0.7222 1.2497 8 1 3.9332 0.3053 1.2498 9 6 4.0794 -1.4434 2.4990 10 6 5.5813 -1.3370 2.5624 11 1 6.1183 -0.8077 1.7893 12 6 6.2697 -1.9147 3.6081 13 7 7.5805 -1.8224 3.6633 14 14 5.3408 -2.8297 4.9457 15 1 4.9791 -1.8843 6.0324 16 1 4.1051 -3.4223 4.3737 17 1 6.1995 -3.9097 5.4947 18 6 2.0395 -0.7216 1.2494 19 1 1.6761 -0.2080 2.1395 20 8 1.5625 -2.0687 1.2492 21 1 -0.3634 0.5140 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3635 -1.0276 0.0005 24 1 1.6765 -1.7491 -1.2490 25 1 1.6766 -0.2076 -2.1392 26 1 3.9332 -1.2364 -2.1385 27 1 3.9337 0.3055 -1.2486 28 1 5.1694 -1.4436 0.0010 29 1 3.7156 -2.4711 0.0004 30 1 3.7910 -2.4936 2.4554 31 1 3.6447 -0.9837 3.3867 32 1 8.0647 -2.2291 4.3987 33 1 0.5986 -2.1446 1.2486 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238418301.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = -107.531839 kcal Electronic energy + Delta-G solvation = -13370.020190 eV Core-core repulsion = 11200.289202 eV Total energy + Delta-G solvation = -2169.730988 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.50951 -36.11551 -35.40820 -33.79088 -31.98214 -28.93366 -27.07605 -24.57135 -22.75903 -21.12208 -20.50456 -18.90344 -17.82909 -16.61334 -16.20516 -15.72107 -14.99913 -14.89054 -14.49205 -14.12566 -13.75435 -13.46258 -13.23515 -13.06984 -12.67984 -12.44752 -12.28197 -11.99438 -11.74297 -11.59574 -11.46393 -11.37218 -11.15817 -10.76364 -10.58246 -10.34388 -8.28137 -6.29719 1.32180 1.35172 1.48881 2.36441 3.06997 3.53476 3.82026 3.89423 4.01370 4.28219 4.37070 4.54085 4.58643 4.64707 4.69611 4.78636 4.97900 5.02032 5.09130 5.15684 5.20079 5.25513 5.41798 5.43292 5.47784 5.54710 5.58681 5.71780 5.81409 6.32213 6.76936 7.05905 7.33966 8.88554 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050068 B = 0.010326 C = 0.009141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.103105 B = 2711.077681 C = 3062.289624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.075 0.925 4 C -0.100 4.100 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.068 4.068 8 H 0.062 0.938 9 C 0.001 3.999 10 C -0.520 4.520 11 H 0.035 0.965 12 C 0.002 3.998 13 N -0.953 5.953 14 Si 0.947 3.053 15 H -0.265 1.265 16 H -0.254 1.254 17 H -0.283 1.283 18 C 0.117 3.883 19 H 0.050 0.950 20 O -0.571 6.571 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.014 0.986 31 H 0.008 0.992 32 H 0.265 0.735 33 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 2.677 -7.563 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 H 0.094 0.906 4 C -0.138 4.138 5 C -0.154 4.154 6 C -0.134 4.134 7 C -0.086 4.086 8 H 0.080 0.920 9 C -0.036 4.036 10 C -0.558 4.558 11 H 0.054 0.946 12 C -0.194 4.194 13 N -0.594 5.594 14 Si 0.771 3.229 15 H -0.190 1.190 16 H -0.178 1.178 17 H -0.209 1.209 18 C 0.059 3.941 19 H 0.068 0.932 20 O -0.379 6.379 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -15.619 2.504 -7.470 17.494 hybrid contribution 0.013 -0.257 0.841 0.879 sum -15.606 2.247 -6.629 17.104 Atomic orbital electron populations 1.21813 0.93089 1.02596 1.02725 1.21792 0.97316 0.99727 0.95124 0.90626 1.21447 0.94183 1.00917 0.97234 1.21560 0.96894 1.00115 0.96844 1.21302 0.98800 0.99004 0.94302 1.21009 0.93211 0.98843 0.95545 0.91964 1.19449 0.93667 0.96084 0.94419 1.21511 0.92433 1.33629 1.08219 0.94631 1.25977 0.95589 0.97104 1.00753 1.70069 1.08368 1.47368 1.33595 0.85700 0.79207 0.78819 0.79178 1.19048 1.17807 1.20888 1.21816 0.93211 0.82678 0.96435 0.93187 1.86590 1.27044 1.26895 1.97353 0.92140 0.91134 0.91702 0.91910 0.90445 0.91651 0.92379 0.94842 0.93297 0.96804 0.97361 0.92649 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.89 71.98 0.64 -1.81 16 2 C -0.12 -2.88 2.55 -10.79 -0.03 -2.90 16 3 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.10 -2.43 5.06 30.59 0.15 -2.28 16 5 C -0.12 -3.49 5.92 30.60 0.18 -3.31 16 6 C -0.10 -3.85 4.87 30.60 0.15 -3.70 16 7 C -0.07 -2.77 1.97 -10.79 -0.02 -2.79 16 8 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 9 C 0.00 0.06 3.30 29.85 0.10 0.16 16 10 C -0.52 -31.28 8.96 25.60 0.23 -31.05 16 11 H 0.04 2.33 7.30 -2.91 -0.02 2.31 16 12 C 0.00 0.11 5.47 84.65 0.46 0.58 16 13 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 14 Si 0.95 46.90 27.47 68.60 1.88 48.78 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.25 -12.12 6.54 99.48 0.65 -11.47 16 17 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 18 C 0.12 3.68 2.71 30.59 0.08 3.76 16 19 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 20 O -0.57 -17.84 11.35 -148.98 -1.69 -19.53 16 21 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 22 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.06 0.97 6.77 -2.39 -0.02 0.96 16 24 H 0.06 1.58 7.68 -2.39 -0.02 1.56 16 25 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 1.54 6.95 -2.39 -0.02 1.52 16 29 H 0.05 2.03 7.68 -2.39 -0.02 2.01 16 30 H 0.01 0.72 6.90 -2.39 -0.02 0.70 16 31 H 0.01 0.40 7.57 -2.38 -0.02 0.38 16 32 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.38 8.05 7.37 -74.06 -0.55 7.51 16 Total: -1.00 -69.77 254.89 2.91 -66.86 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.47 Total: 8.73 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 1.95 Total: -43.35 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.30 Total: -61.49 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.69 Total: -19.53 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.78 kcal Total: -69.77 2.91 -66.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238418301.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.674 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds