Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.50697 * 109.47291 * 300.00125 * 3 2 1 5 5 H 1.08006 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00162 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99868 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47023 * 90.00014 * 8 6 4 10 10 H 1.48496 * 109.47251 * 210.00457 * 8 6 4 11 11 H 1.48498 * 109.47139 * 330.00202 * 8 6 4 12 12 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 13 13 C 1.52997 * 109.46817 * 299.99737 * 12 2 1 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 2 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 O 1.42896 * 109.46906 * 179.97438 * 16 15 14 19 19 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 20 20 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 21 21 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 23 23 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 24 24 H 0.96996 * 119.99309 * 179.97438 * 7 6 4 25 25 H 1.08993 * 109.47662 * 59.99968 * 12 2 1 26 26 H 1.09002 * 109.47075 * 180.02562 * 12 2 1 27 27 H 1.09002 * 109.47153 * 60.00231 * 13 12 2 28 28 H 1.09001 * 109.47289 * 180.02562 * 13 12 2 29 29 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 31 31 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 32 32 H 1.09002 * 109.46716 * 60.00455 * 15 14 13 33 33 H 0.96699 * 114.00604 * 59.99725 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5377 2.1529 -1.2304 5 1 0.9171 1.6280 -1.9416 6 6 1.8704 3.4731 -1.4484 7 7 1.4324 4.0929 -2.5225 8 14 2.9432 4.3813 -0.2181 9 1 4.3712 4.2183 -0.5915 10 1 2.5913 5.8240 -0.2247 11 1 2.7198 3.8236 1.1399 12 6 2.0400 -0.7212 -1.2493 13 6 1.5301 -2.1637 -1.2493 14 6 2.0400 -2.8850 0.0000 15 6 1.5301 -2.1637 1.2492 16 6 2.0400 -0.7212 1.2492 17 1 3.1300 -0.7212 1.2493 18 8 1.5632 -0.0475 2.4157 19 1 -0.3634 0.5137 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6766 1.9564 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6662 5.0218 -2.6755 25 1 1.6768 -0.2074 -2.1392 26 1 3.1300 -0.7215 -1.2490 27 1 0.4401 -2.1637 -1.2493 28 1 1.8938 -2.6776 -2.1390 29 1 1.6771 -3.9128 -0.0002 30 1 3.1300 -2.8849 0.0000 31 1 1.8930 -2.6779 2.1392 32 1 0.4401 -2.1638 1.2492 33 1 1.8481 -0.4509 3.2471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238472181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = -79.416866 kcal Electronic energy + Delta-G solvation = -13601.850048 eV Core-core repulsion = 11433.338217 eV Total energy + Delta-G solvation = -2168.511831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31110 -35.24477 -33.56105 -31.65533 -29.27616 -27.44440 -25.93664 -22.98347 -21.89658 -20.15809 -17.75801 -16.76955 -16.63086 -14.91086 -14.37915 -14.20078 -13.55722 -13.32373 -12.79081 -12.53180 -12.40030 -12.01889 -11.45511 -11.38352 -10.99644 -10.67315 -10.65397 -10.49508 -10.36715 -9.96373 -9.72260 -9.54326 -9.44560 -8.90768 -8.75770 -8.42558 -5.94216 -3.89616 3.37842 3.45322 3.53307 4.55537 4.68390 5.08257 5.09854 5.34292 5.39862 5.63982 5.67362 5.80324 5.89851 5.94537 5.97709 6.12519 6.29969 6.35633 6.46835 6.49934 6.62969 6.84629 6.87573 7.06289 7.19505 7.26880 7.43296 7.64225 7.91705 8.12865 8.65417 9.11161 9.69863 11.18888 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044451 B = 0.011945 C = 0.010546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.758586 B = 2343.438748 C = 2654.281970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.036 4.036 3 C -0.001 4.001 4 C -0.507 4.507 5 H 0.076 0.924 6 C 0.064 3.936 7 N -0.908 5.908 8 Si 0.874 3.126 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.264 1.264 12 C -0.100 4.100 13 C -0.126 4.126 14 C -0.114 4.114 15 C -0.151 4.151 16 C 0.111 3.889 17 H 0.045 0.955 18 O -0.557 6.557 19 H 0.050 0.950 20 H 0.064 0.936 21 H 0.035 0.965 22 H 0.025 0.975 23 H 0.005 0.995 24 H 0.260 0.740 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -12.248 6.814 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.036 4.036 3 C -0.039 4.039 4 C -0.545 4.545 5 H 0.094 0.906 6 C -0.136 4.136 7 N -0.548 5.548 8 Si 0.702 3.298 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.188 1.188 12 C -0.138 4.138 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.189 4.189 16 C 0.052 3.948 17 H 0.063 0.937 18 O -0.361 6.361 19 H 0.069 0.931 20 H 0.083 0.917 21 H 0.054 0.946 22 H 0.044 0.956 23 H 0.023 0.977 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.207 -11.683 6.263 13.311 hybrid contribution 0.934 0.211 1.003 1.387 sum 2.141 -11.472 7.266 13.748 Atomic orbital electron populations 1.21767 0.94881 0.99120 1.02516 1.20347 0.96058 0.96749 0.90473 1.19581 0.95101 0.91218 0.97961 1.21198 1.31426 0.96034 1.05883 0.90570 1.25004 0.95888 0.97599 0.95102 1.69918 1.46388 1.11505 1.26952 0.86850 0.80992 0.78842 0.83093 1.20591 1.21632 1.18836 1.21535 0.99821 0.93242 0.99186 1.21684 1.01082 0.96940 0.96608 1.21454 1.00419 0.98236 0.95007 1.22307 1.02182 0.96795 0.97619 1.21984 0.96145 0.89989 0.86653 0.93732 1.86655 1.77461 1.56645 1.15295 0.93069 0.91721 0.94593 0.95633 0.97705 0.92982 0.89915 0.92895 0.91803 0.92668 0.92650 0.92382 0.92931 0.90982 0.79318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 7.38 37.16 0.27 -2.23 16 2 C -0.04 -0.73 0.36 -154.51 -0.06 -0.78 16 3 C 0.00 -0.03 2.96 -27.88 -0.08 -0.12 16 4 C -0.51 -14.40 8.20 -34.44 -0.28 -14.69 16 5 H 0.08 2.28 5.92 -52.48 -0.31 1.97 16 6 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 7 N -0.91 -28.34 13.96 55.43 0.77 -27.56 16 8 Si 0.87 22.52 27.47 -169.99 -4.67 17.85 16 9 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 12 C -0.10 -1.87 4.48 -26.73 -0.12 -1.99 16 13 C -0.13 -1.87 5.65 -26.73 -0.15 -2.02 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.64 16 15 C -0.15 -2.09 5.27 -26.73 -0.14 -2.23 16 16 C 0.11 1.89 2.58 -26.73 -0.07 1.82 16 17 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 18 O -0.56 -9.55 11.97 -35.23 -0.42 -9.98 16 19 H 0.05 1.06 7.68 -51.93 -0.40 0.66 16 20 H 0.06 1.41 6.62 -51.93 -0.34 1.07 16 21 H 0.04 0.61 4.81 -51.93 -0.25 0.36 16 22 H 0.03 0.67 6.74 -51.93 -0.35 0.32 16 23 H 0.00 0.12 7.57 -51.93 -0.39 -0.28 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.08 1.74 6.62 -51.93 -0.34 1.39 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.03 6.43 -51.93 -0.33 0.70 16 33 H 0.36 4.30 9.08 45.56 0.41 4.71 16 LS Contribution 247.48 15.07 3.73 3.73 Total: -1.00 -31.44 247.48 -5.82 -37.26 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.35 Total: 0.79 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -0.88 Total: -22.09 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.42 Total: -9.98 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.44 -5.82 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238472181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.155 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds