Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47302 * 2 1 4 4 C 1.50697 * 109.47291 * 300.00125 * 3 2 1 5 5 H 1.08006 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00162 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99868 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47023 * 90.00014 * 8 6 4 10 10 H 1.48496 * 109.47251 * 210.00457 * 8 6 4 11 11 H 1.48498 * 109.47139 * 330.00202 * 8 6 4 12 12 C 1.53002 * 109.47346 * 240.00346 * 2 1 3 13 13 C 1.52997 * 109.46817 * 299.99737 * 12 2 1 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 2 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 17 17 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 18 18 O 1.42896 * 109.46906 * 179.97438 * 16 15 14 19 19 H 1.08992 * 109.47554 * 299.99692 * 1 2 3 20 20 H 1.09004 * 109.47108 * 59.99942 * 1 2 3 21 21 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47109 * 59.99598 * 3 2 1 23 23 H 1.09002 * 109.47508 * 179.97438 * 3 2 1 24 24 H 0.96996 * 119.99309 * 179.97438 * 7 6 4 25 25 H 1.08993 * 109.47662 * 59.99968 * 12 2 1 26 26 H 1.09002 * 109.47075 * 180.02562 * 12 2 1 27 27 H 1.09002 * 109.47153 * 60.00231 * 13 12 2 28 28 H 1.09001 * 109.47289 * 180.02562 * 13 12 2 29 29 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 31 31 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 32 32 H 1.09002 * 109.46716 * 60.00455 * 15 14 13 33 33 H 0.96699 * 114.00604 * 59.99725 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5377 2.1529 -1.2304 5 1 0.9171 1.6280 -1.9416 6 6 1.8704 3.4731 -1.4484 7 7 1.4324 4.0929 -2.5225 8 14 2.9432 4.3813 -0.2181 9 1 4.3712 4.2183 -0.5915 10 1 2.5913 5.8240 -0.2247 11 1 2.7198 3.8236 1.1399 12 6 2.0400 -0.7212 -1.2493 13 6 1.5301 -2.1637 -1.2493 14 6 2.0400 -2.8850 0.0000 15 6 1.5301 -2.1637 1.2492 16 6 2.0400 -0.7212 1.2492 17 1 3.1300 -0.7212 1.2493 18 8 1.5632 -0.0475 2.4157 19 1 -0.3634 0.5137 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6766 1.9564 0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6662 5.0218 -2.6755 25 1 1.6768 -0.2074 -2.1392 26 1 3.1300 -0.7215 -1.2490 27 1 0.4401 -2.1637 -1.2493 28 1 1.8938 -2.6776 -2.1390 29 1 1.6771 -3.9128 -0.0002 30 1 3.1300 -2.8849 0.0000 31 1 1.8930 -2.6779 2.1392 32 1 0.4401 -2.1638 1.2492 33 1 1.8481 -0.4509 3.2471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238472181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = -101.611300 kcal Electronic energy + Delta-G solvation = -13602.812471 eV Core-core repulsion = 11433.338217 eV Total energy + Delta-G solvation = -2169.474254 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.70879 -36.58320 -35.35235 -33.57403 -30.54160 -29.39963 -27.46926 -24.74232 -23.28701 -21.58758 -19.29304 -18.77272 -18.04374 -16.48996 -16.17122 -15.65060 -14.90531 -14.80201 -14.60796 -14.14871 -13.93437 -13.58315 -13.11132 -12.88865 -12.74547 -12.31954 -12.18649 -12.03623 -11.87398 -11.73414 -11.46908 -11.08993 -10.96413 -10.70495 -10.57754 -10.36339 -8.24122 -6.23729 1.31748 1.34815 1.47879 2.37983 3.10763 3.48208 3.86468 3.90716 4.15443 4.32156 4.40777 4.51338 4.57802 4.60556 4.70676 4.83506 5.02250 5.08110 5.17484 5.19917 5.24796 5.34042 5.38472 5.42945 5.48437 5.55449 5.66322 5.77260 5.85613 6.38663 6.82316 7.09503 7.38894 8.91990 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044451 B = 0.011945 C = 0.010546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.758586 B = 2343.438748 C = 2654.281970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C 0.003 3.997 4 C -0.505 4.505 5 H 0.045 0.955 6 C 0.002 3.998 7 N -0.953 5.953 8 Si 0.940 3.060 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.257 1.257 12 C -0.098 4.098 13 C -0.121 4.121 14 C -0.110 4.110 15 C -0.143 4.143 16 C 0.114 3.886 17 H 0.048 0.952 18 O -0.580 6.580 19 H 0.038 0.962 20 H 0.030 0.970 21 H 0.067 0.933 22 H 0.009 0.991 23 H 0.004 0.996 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -14.282 8.701 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.034 4.034 4 C -0.543 4.543 5 H 0.063 0.937 6 C -0.194 4.194 7 N -0.595 5.595 8 Si 0.764 3.236 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.181 1.181 12 C -0.136 4.136 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.181 4.181 16 C 0.055 3.945 17 H 0.066 0.934 18 O -0.387 6.387 19 H 0.057 0.943 20 H 0.050 0.950 21 H 0.086 0.914 22 H 0.028 0.972 23 H 0.022 0.978 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.205 -13.742 8.171 16.139 hybrid contribution 0.574 0.836 0.375 1.081 sum 2.780 -12.906 8.546 15.727 Atomic orbital electron populations 1.21657 0.95074 1.00464 1.00149 1.20361 0.95960 0.94541 0.93485 1.19499 0.94788 0.94061 0.95047 1.21481 1.30217 0.96135 1.06509 0.93666 1.25897 0.97632 0.98779 0.97060 1.70061 1.48332 1.12014 1.29076 0.85808 0.79520 0.77519 0.80713 1.19279 1.21109 1.18099 1.21439 0.99700 0.95610 0.96817 1.21638 1.00934 0.94333 0.98881 1.21464 1.00972 0.99195 0.93108 1.22237 1.01862 0.94506 0.99467 1.21845 0.96224 0.91416 0.84971 0.93361 1.86591 1.77827 1.57741 1.16577 0.94298 0.95045 0.91391 0.97222 0.97765 0.92846 0.93731 0.92902 0.91978 0.91120 0.89788 0.91567 0.89709 0.91404 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 7.38 71.98 0.53 -4.13 16 2 C -0.04 -1.73 0.36 -52.18 -0.02 -1.75 16 3 C 0.00 0.17 2.96 29.85 0.09 0.26 16 4 C -0.51 -29.73 8.20 25.60 0.21 -29.52 16 5 H 0.05 2.88 5.92 -2.91 -0.02 2.86 16 6 C 0.00 0.13 5.47 84.65 0.46 0.59 16 7 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 8 Si 0.94 46.96 27.47 68.60 1.88 48.84 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 12 C -0.10 -3.63 4.48 30.59 0.14 -3.49 16 13 C -0.12 -3.30 5.65 30.60 0.17 -3.12 16 14 C -0.11 -2.39 5.92 30.60 0.18 -2.21 16 15 C -0.14 -3.33 5.27 30.59 0.16 -3.17 16 16 C 0.11 3.57 2.58 30.59 0.08 3.65 16 17 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 18 O -0.58 -18.45 11.97 -148.98 -1.78 -20.24 16 19 H 0.04 1.61 7.68 -2.39 -0.02 1.59 16 20 H 0.03 1.42 6.62 -2.38 -0.02 1.40 16 21 H 0.07 2.24 4.81 -2.39 -0.01 2.23 16 22 H 0.01 0.50 6.74 -2.39 -0.02 0.49 16 23 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 24 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.04 1.95 6.62 -2.39 -0.02 1.93 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.71 6.43 -2.39 -0.02 1.70 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.66 6.43 -2.39 -0.02 1.65 16 33 H 0.39 7.86 9.08 -74.06 -0.67 7.19 16 Total: -1.00 -69.58 247.48 2.77 -66.82 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 0.36 Total: 8.56 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 2.01 Total: -42.89 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.30 Total: -61.09 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.78 Total: -20.24 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.84 kcal Total: -69.58 2.77 -66.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238472181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.794 kcal (2) G-P(sol) polarization free energy of solvation -69.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds