Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.50697 * 109.47466 * 300.00004 * 3 2 1 5 5 H 1.08006 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00033 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46872 * 299.99975 * 8 6 4 12 12 C 1.53006 * 109.46977 * 240.00269 * 2 1 3 13 13 C 1.52997 * 109.47127 * 299.99541 * 12 2 1 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 2 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 16 16 C 1.52997 * 109.47415 * 120.00127 * 2 1 3 17 17 H 1.09002 * 109.47045 * 300.00068 * 16 2 1 18 18 O 1.42896 * 109.47412 * 180.02562 * 16 2 1 19 19 H 1.08992 * 109.47063 * 299.99823 * 1 2 3 20 20 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 21 21 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 23 23 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 24 24 H 0.96996 * 120.00887 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46505 * 179.97438 * 12 2 1 26 26 H 1.08996 * 109.46884 * 60.00293 * 12 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 13 12 2 28 28 H 1.09001 * 109.46832 * 60.00321 * 13 12 2 29 29 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 31 31 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 32 32 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 33 33 H 0.96699 * 114.00604 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1529 -1.2304 5 1 0.9164 1.6282 -1.9412 6 6 1.8702 3.4731 -1.4483 7 7 2.6262 4.1123 -0.5827 8 14 1.2469 4.3539 -2.9732 9 1 -0.2380 4.3534 -2.9729 10 1 1.7419 5.7539 -2.9732 11 1 1.7419 3.6543 -4.1860 12 6 2.0400 -0.7212 -1.2493 13 6 1.5301 -2.1637 -1.2493 14 6 2.0401 -2.8849 -0.0001 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -0.7212 1.2492 17 1 1.6768 -0.2074 2.1392 18 8 3.4690 -0.7207 1.2495 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6766 1.9563 0.8900 23 1 3.1299 1.4426 -0.0005 24 1 2.8606 5.0410 -0.7361 25 1 3.1300 -0.7208 -1.2495 26 1 1.6767 -0.2073 -2.1392 27 1 1.8938 -2.6777 -2.1391 28 1 0.4401 -2.1637 -1.2493 29 1 1.6772 -3.9128 -0.0004 30 1 3.1301 -2.8849 -0.0001 31 1 0.4402 -2.1638 1.2492 32 1 1.8931 -2.6779 2.1392 33 1 3.8625 -1.1627 2.0143 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238472212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -81.477516 kcal Electronic energy + Delta-G solvation = -13609.461111 eV Core-core repulsion = 11440.859923 eV Total energy + Delta-G solvation = -2168.601188 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.24502 -34.87378 -33.44334 -31.57999 -29.48800 -26.86135 -25.63643 -23.18205 -21.92346 -20.28663 -17.65622 -16.34848 -16.08835 -15.13357 -14.44633 -14.21250 -13.90601 -12.74055 -12.52080 -12.30380 -12.16427 -11.75137 -11.47966 -11.16029 -11.01129 -10.85171 -10.62407 -10.42465 -10.37602 -9.97095 -9.70907 -9.60684 -9.20999 -8.70996 -8.63631 -8.22869 -5.88285 -3.88622 3.38397 3.42954 3.44967 4.53793 4.84567 5.21199 5.24868 5.35511 5.46932 5.77102 5.86750 5.92347 6.02093 6.07044 6.09568 6.23972 6.36076 6.39250 6.49314 6.59107 6.68853 6.90902 6.97298 7.21170 7.28982 7.38490 7.81845 8.01890 8.16508 8.26662 8.56294 9.17589 9.73228 11.23162 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050720 B = 0.010774 C = 0.009933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.921187 B = 2598.289854 C = 2818.271901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 C 0.038 3.962 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.055 3.945 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.094 4.094 13 C -0.123 4.123 14 C -0.110 4.110 15 C -0.152 4.152 16 C 0.113 3.887 17 H 0.044 0.956 18 O -0.552 6.552 19 H 0.043 0.957 20 H 0.067 0.933 21 H 0.038 0.962 22 H 0.010 0.990 23 H 0.025 0.975 24 H 0.258 0.742 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -11.633 2.611 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.046 4.046 3 C 0.001 3.999 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 C -0.131 4.131 13 C -0.161 4.161 14 C -0.148 4.148 15 C -0.190 4.190 16 C 0.055 3.945 17 H 0.062 0.938 18 O -0.355 6.355 19 H 0.062 0.938 20 H 0.086 0.914 21 H 0.057 0.943 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.266 -11.125 2.073 11.541 hybrid contribution -0.267 0.290 -0.211 0.447 sum -2.533 -10.836 1.863 11.282 Atomic orbital electron populations 1.21859 0.95385 0.99202 1.02363 1.20538 0.94191 0.98222 0.91617 1.19068 0.96948 0.87478 0.96436 1.21258 1.30750 0.95837 1.06927 0.92534 1.25009 0.95459 0.97747 0.96326 1.69964 1.37222 1.10739 1.35689 0.86758 0.79090 0.78768 0.83955 1.20410 1.21460 1.20365 1.21415 1.00688 0.92530 0.98487 1.21654 1.00337 0.97483 0.96599 1.21391 1.01058 0.97383 0.94934 1.22304 1.01491 0.97511 0.97715 1.21916 0.80485 0.93243 0.98899 0.93797 1.86669 1.19815 1.80795 1.48233 0.93763 0.91425 0.94328 0.97203 0.95625 0.93187 0.92083 0.91413 0.93145 0.92429 0.93408 0.91799 0.91205 0.93001 0.79579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 7.53 37.16 0.28 -2.21 16 2 C -0.05 -0.95 0.36 -154.51 -0.06 -1.00 16 3 C 0.04 1.00 3.90 -27.89 -0.11 0.89 16 4 C -0.51 -14.34 7.65 -34.44 -0.26 -14.61 16 5 H 0.06 1.53 5.68 -52.48 -0.30 1.24 16 6 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 8 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 C -0.09 -1.87 4.33 -26.73 -0.12 -1.98 16 13 C -0.12 -1.96 5.65 -26.73 -0.15 -2.11 16 14 C -0.11 -1.58 5.78 -26.73 -0.15 -1.74 16 15 C -0.15 -2.19 5.36 -26.73 -0.14 -2.34 16 16 C 0.11 2.02 2.73 -26.73 -0.07 1.95 16 17 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 18 O -0.55 -10.02 11.30 -35.23 -0.40 -10.42 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 21 H 0.04 0.62 4.81 -51.93 -0.25 0.37 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.03 0.75 7.68 -51.93 -0.40 0.35 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 26 H 0.07 1.45 6.62 -51.93 -0.34 1.10 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 31 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.36 4.69 9.08 45.56 0.41 5.10 16 LS Contribution 250.06 15.07 3.77 3.77 Total: -1.00 -31.10 250.06 -6.15 -37.25 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.36 Total: 0.88 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.88 Total: -21.65 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.74 Total: -26.82 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.40 Total: -10.42 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.10 -6.15 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238472212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.227 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds